YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ABCA5_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.17
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	23	0.80
Transmembrane Helix	24	47	0.83
Non-Cytoplasmic	48	235	0.78
Transmembrane Helix	236	258	0.77
Cytoplasmic	259	279	0.56
Transmembrane Helix	280	305	0.86
Non-Cytoplasmic	306	313	0.56
Transmembrane Helix	314	337	0.89
Cytoplasmic	338	345	0.55
Transmembrane Helix	346	366	0.95
Non-Cytoplasmic	367	372	0.54
Transmembrane Helix	373	397	0.89
Cytoplasmic	398	417	0.59
Transmembrane Helix	418	436	0.81
Non-Cytoplasmic	437	553	0.55
Transmembrane Helix	554	568	0.17
Cytoplasmic	569	871	0.54
Transmembrane Helix	872	893	0.59
Non-Cytoplasmic	894	1051	0.89
Transmembrane Helix	1052	1074	0.94
Cytoplasmic	1075	1100	0.84
Transmembrane Helix	1101	1122	0.94
Non-Cytoplasmic	1123	1129	0.85
Transmembrane Helix	1130	1153	0.91
Cytoplasmic	1154	1164	0.76
Transmembrane Helix	1165	1185	0.93
Non-Cytoplasmic	1186	1212	0.75
Transmembrane Helix	1213	1233	0.80
Cytoplasmic	1234	1241	0.80
Transmembrane Helix	1242	1266	0.85
Non-Cytoplasmic	1267	1662	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEKSSQLKT LLKKNLLLKS KSKCGICCEI VFPIIIVLLV FAILVLVQLF KPNYDLIKTT  60
   61 QFSNRINENN IIIYGGKAGS LNVEQKGVID MMKFQLSNEL NKSISEVDVY FKEINDKSEM 120
  121 ENYFQINSTQ VFGGIWFESN QLSSVANTTN TNTTTNSFKY SIRLDSNSVL DSNKVKDNGI 180
  181 DSSDYLTKNW AYIQIAMDQA IFGYFGLDYK LVINGQRYPD PYVELWQKWI NGRESVFKSA 240
  241 GSVFVSAALL IFTFRLVTEL VVEKETKIRE GMSIMGLNQY CYFISWIITS LVTALPIDLI 300
  301 IIVILKGSQV IHSTSWIIVI VTLILYLLTL QLLAFIFSMF FDKSKFAGLL TFLTILLINI 360
  361 CGIFIGEYEI INIHIKLLLC CIFSPIGIAC SFYIMSIRDI PDTISTINLN QVISEKQIIG 420
  421 TFVFNIIFYT FLIWYLDKIV KTEYGTKEPW YFLFTKRYWT VGAGKINKKN KNKEYNYNDI 480
  481 ESTIQNNNND NIEMVPIEVR NKTTISIRNL RKEFKTGDGL RIAVNDLNLD MFDGQIHGLL 540
  541 GPNGSGKSTT ISMLTGLLSP TSGTAFILGN DITYQMNEIR KCTGVCLQTD IIWNQLTVLE 600
  601 HLEIYASLKG ITNKKQIKSE SLKMANEIDL GEKLHTPAGS LSGGQKRKLC LGIAFIGRST 660
  661 IIFLDEVSSG MDPSSRRKVW DFLLSHKKGK TIILTTHYLD EADYLSDRIS IISHGKLITD 720
  721 GSSLFLKNKY GVGYLLTCSK SLNTIDQFNV DQVTQFIRDQ IPDVTVLSNA GSEISFRLPT 780
  781 ASLPVFSKFF KDFDENLSNF HIDSYGISVT TLEEVFLKIG TDIDTDALSI ADGNGNDDEL 840
  841 KRSIGVSSTG IKSKQQLKAL LIKRVKTSSK DFKAFLLSLL LPLLVIIGSI IVFKEVDNEV 900
  901 IFYNNSTEPL TFSLLQQYGK NDIVPIQLAG TTSEFDFNKF LSNSPYFNQF QYLNNSINFN 960
  961 QYLINNYKQS SGSINFTIPL SSSLINNTTK VISYNSLFNF NYIHSWPVHV NLINDALLRN1020
 1021 HNGIGIECTS LPFDHILTSF QKASQGMNIQ SIVYFIVIMM AGFSLMAGSF AGSISQERTN1080
 1081 RIKRLLYISG CKKYIYWVSN LLWDYFFAFI LLLITCIILA IVDDKFNDQF GLFFLSLVLF1140
 1141 SLSIIPLSYL FSFKFSSFGK STGAITAIHF SIGVIMTIAM IILRIEVIIK NSSSLENIAD1200
 1201 IIDIVFNILS PLYAFSRVIF IISGFPGSLR LGALKIDDYW SLHYASTPII ILSVHVVVWT1260
 1261 IFILLIDYSP EFKGYLRNPK TILPPPPPID EDSDVSAERI RLESMSPIPS TDQGSGGGGD1320
 1321 MLQYKGLHKL FIGKGKNPNK NAVYNSTLGI PQGQTFGLLG LNGAGKTTTV SMLAGDILPT1380
 1381 SGQITINGHD LVTDRAQALR GVSVCPQFDA LITLLTAREQ LSLYCAIKGV PDDKISLVVE1440
 1441 AFIKMMDLGK IANSNTGGYS GGNKRKVSLS IAMLGNPSVV LIDEASSGCD PIIRYRQCQV1500
 1501 ISELGKNKVI ILTSHSMSEI QALCSRMTIM RDGQFKCLGS TQHIKSKFGA GYSVEVKFKK1560
 1561 SCLEVGIPQS LQCVLECFPN ATILDQHDLM ASLELPNPPE NPIKVSEIFN ILSTELSSIL1620
 1621 DDYSVSQTSL EQVFLKLTGA THEDRLNLNN QQQQQQTIPN SD