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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60472028, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.93
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLIINNFLL LFLIFLSISI QFVKSINPPQ DEFDCLINII NKFNYKTFDS YKDITKICSL  60
   61 TTWVTCDSTT GSVKSFILSN LQYNNYEQAI SSDFSCLPNI ETLAIYYQNV SKELIYFKSP 120
  121 KLTKLTFFNT QVLGGAALDQ PFEKFDDLSI TNCKGLDINT PFKFSYFNKV TRFMMSGLYA 180
  181 QLEFDSLAFK NKTSFHLSGS NYPDLTGYTG IQQAEFEFDD TFKLDSISNF AKYTSFGRLI 240
  241 VYHYSNIKIP FYFSQNTKIY SLWLATGGST FTSPYETPTT MIDLSSTRYT DFLIGGFTNE 300
  301 NLNGKFPFIM PSTCSNLNFN SNNLTILPND IVCKTVSFQN NGINSELPKF IGKADSYDLK 360
  361 NNKFTGTIDQ SWCSTELVIN NNKLIGKIPS CYSCYLNAPK PSGGLIAMYD RFTGGNSFTN 420
  421 LNKTAVTCTT FAPQVKWLSS NSISVTGIDI GFDPNIWLFN GGVKVMQSIN SSPGQYPQLI 480
  481 LYSPTLTGET FTINFQYPIN YVFTFPKVSK NPLVTSASIN GKLYTFNGTY FSSHMRHQYQ 540
  541 DIRVKGSLCT IVSTDFYSVT CSANLVIDSA LKMVNITTGQ DYNKKTTIYI RIDGLVSNDH 600
  601 RCPNDCSGNQ GICDLSTGTC YCESGYSGSD CSFKNCGSSV PDCNGAGTCN GATGLCTCDS 660
  661 THVGDYCQYS TSACPNNCGG SAYGTCNANK TCTCNAGFAG VDCSKPTQCV NNCSGNGVCV 720
  721 NGFCQCFDGY GDSSCSAKIL NCPVGAGGAP CNGFYGACNP ATGVCTCRDG YQGSACDDRL 780
  781 IQCPVAMNSI VCNRLDINWC DTTTGKCQCD PNFQGVDCSL PLVQCPLYGG KVCGGFGTCN 840
  841 NQTGVCSCDG SHQGADCSLP FIQCPLNGGK VCGGFGTCNN QTGVCTCDGS HQGTSCSLPF 900
  901 VQCPISFLNP CGGSKRGNCN NQIGVCNCLA GYQGLDCSLP FIKCPTINSN DCSGFGSCNN 960
  961 QTGICACDSS HQSTDCSLPF IQCPLNGGKV CSSFGTCDNQ IGICTCDGSH QGNDCSKTFV1020
 1021 QCPSVNSNSC SGFGSCNNET GACSCNSGRL NNDCSGIQCD VPNCNSHGTC NNTIGKCQCD1080
 1081 SSHQGSDCST PFIDCPSINL NDCSGFGSCN NQTGTCTCNS GKTLSDCTGI QCSVPDCNGH1140
 1141 GTCDTNIGKC QCDSSHQGAD CSLPLVQCPL YGGKVCGNFG TCNNQTGVCS CDSSHQGSDC1200
 1201 SSPFVKCPTV NSNDCSDFGS CNNQTGSCSC DSSHQGADCS LPFIQCPIYS NSLCGGSSFG1260
 1261 SCNNQTGVCT CDGSQQGADC SLPLIQCPSI NSKDCSGFGS CNNETGICSC NLGRLNNDCS1320
 1321 GIQCGSPNCN GHGTCDTTLG VCKCDSSHQG NDCSLPFIKC PSINSNDCSG FGSCNNQTGV1380
 1381 CSCNSGRALS DCSGIECSVP NCNNGGVCDT SIGKCQCDSS HQGNDCNIPL IQCPNLCSGF1440
 1441 GSCNNQTGIC SCNSGRLNND CSGIQCDVPN CNSHGTCDIT IGKCQCLKNT WSGSDCSIPY1500
 1501 QVIRSVNEST TAGGEATFEG VFGDVHQGIK MQIGGIDCPI IFNSSTIIKC MAPEGNGIKK1560
 1561 VTLFQNDIYY TYDKYKYKAI ELSCPSNCLG NGICNTSTGE CKCNSGYGSY DCSPIINNGG1620
 1621 GGGLGETPNS NSNSGELVIP PKSNTTLNEE TGGTNIVNQK TNFQIYFKSL YEIDYSGQIV1680
 1681 KTYKLENNWV INNDSNNNDQ CTFTQTIDNG CNITSRIDEI NDENGKKFEF AGTSFTVSNG1740
 1741 GIKFTITIDN YQYQSNLNTL TLDFVSSVGE IQDTQNNNEC NSKDTEIDTS NVNDLSSSNF1800
 1801 NYIKISKNNK ILSGRFINRL LSNGKATFFT TSVRNESNSI IVSLNLPHCS QCIIDPDFSV1860
 1861 LLSSDFVSNC PSVVDKRKSY IVPVSVVASV VGAVSVASAG FLIRKKMIER KFFKTYSN

YRC Informatics Platform - Version 3.0
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