YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-9
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSVPFLTSL TSHLGITAID DASDTLSCLI TAFLFIIAAI LTSAQSYVGS AMECWLPQTY  60
   61 SGAWEEFAEN YCFLKDTYFY PRQQSMTDIP MYHKERHRLT YYQWSSMYLA VAGIAFMIPK 120
  121 FIWRLSQSTT DMPLIYFCDT ANEIKIETTE KRSSKVKEMA RFMRSKITTV HTPSIFSCIR 180
  181 MYSVYSIVKM LYLIIAIAQF VILAIFLDQE KDMFWGWTLF MNLLNGITWE TTGLFPRVTF 240
  241 CDFEIRETAG NNRAETVECL IGINVFNEKI FLFLWFWLLF LIFSTLVAHI YNATHIAKPY 300
  301 IINSLLHSIR DHGIVDQKEL FKEFGEKYLT MDGKIILSFV KAQSDLVASE VAVEMYNDFL 360
  361 EVRDQRIYII SHEFNDIQKT RN

Type	Start	End	Confidence
Cytoplasmic	1	24	0.72
Transmembrane Helix	25	48	0.78
Non-Cytoplasmic	49	100	0.71
Transmembrane Helix	101	123	0.85
Cytoplasmic	124	184	0.68
Transmembrane Helix	185	207	0.87
Non-Cytoplasmic	208	270	0.69
Transmembrane Helix	271	293	0.90
Cytoplasmic	294	382	0.83