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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60472577, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAISLDGCNC NCIKCSCNDL LQGLIETENK STTCCSSPII GQQQKPNESN GCKCESGSCG  60
   61 DSGVESDGQQ QQQSTVERKC CPISGLIENT FFRFYIPQLK GNEELVETIK QTLQEISTDV 120
  121 IYVNIDYTNQ IVQVECSVDR YLFKILKQFK SLNLEVAAIQ SKECPELMES MENTPLLNDG 180
  181 SILQSPINNN NNNNNNNDGD YNSRERVFEI KGMKCEVGCA NRIEATLLQN KNIHSVKINF 240
  241 KTKQLFVIAS VNDRTIRKTI EKLGFKCQKQ KQQQQQTSTV TSPLLLDYSN SSSSSSLNDI 300
  301 SSITKSPFEP ISSSDEEVVE INNNNKYNNS TSIEMESIDI KIDNNNNNNK LELIEIISIG 360
  361 VFGMTCASCV GMVEHSIKSV DGVIECNVNL LAERAEIKYN SSICKDVKEI QESIEILGFE 420
  421 TKLIQQSKAG TFHLKLLNYQ EKQSNKLNDE QPLLLFDDLK IKFQGISNLE IIKQHSSSSS 480
  481 QKKNKKNKNS GDQIVLLKVD GDSYQIGARV IMKSLKLDYD IDSELFNPET DDIKNSLMRK 540
  541 REIKKWKHLF IFSISWTLPL IIIAMILVPI KSIKFLHYQL ADGFPVEALI GFILATPVQF 600
  601 ISGATFYKVS YAAVKNLHGN MDLLVAVGST CAYVYSVISI IIGIVNPMYE AMHFFETSAS 660
  661 LITFIILGRW LENIAKGHTS SAIVKLMNLQ SKETTLVTLR NQDNYNGSST APIIIESEEI 720
  721 IQSSLISYGD LLKVIPGQSI PTDGIVINGS SSCDESMITG ESIPVLKKVN DSVTGGTLNL 780
  781 DGVLIIKANK IGSENTLSQI IGLVQQAQTS KAPIQQLADT ISKYFVPIIL LLGLITFGIW 840
  841 IAVTETNSVS AEWRHNTSPF LYSFLTAISV IVIACPCALG LATPTAVMVG TGVGASIGIL 900
  901 IKGGKPLETA HKATAILFDK TGTITTGKMN VTDYRVNHQS NNNDNNNNNN SAPKEEEDKL 960
  961 FFKIVGAAES GSEHPIGKAI VQFCKQTLTT KGADPIGSPM IQDYQFPPVS DFKGIAGRGL1020
 1021 SCIVDSLIQC KIGNLSFMKD NSINVPIEFV ELAQSWETNG KTVIYVSYGD SNDDNDTTST1080
 1081 TTILFKGIMS ISDIPRDDSK RAIKKLKSMG LKCYMVTGDN KRAAKFIANQ VGIDEDHIYS1140
 1141 EVIPKEKAEK VSDLQASGNV VCFVGDGVND SPALSQADVG ISVATGTDIA IESSSIVLLK1200
 1201 NSLTDVYRSI HLSRVVFRRI KINFTLALIY NLCAVPLAAG LFRVIFGVSL PPMAAAAAMV1260
 1261 VSSLSVLSSS LLLKLYSSPN 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle