YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28828822
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	977	0.98
Transmembrane Helix	978	998	0.90
Cytoplasmic	999	1005	0.80
Transmembrane Helix	1006	1027	0.85
Non-Cytoplasmic	1028	1057	0.85
Transmembrane Helix	1058	1080	0.87
Cytoplasmic	1081	1088	0.80
Transmembrane Helix	1089	1111	0.91
Non-Cytoplasmic	1112	1117	0.78
Transmembrane Helix	1118	1137	0.76
Cytoplasmic	1138	1228	0.78
Transmembrane Helix	1229	1250	0.83
Non-Cytoplasmic	1251	1334	0.74
Transmembrane Helix	1335	1350	0.39
Cytoplasmic	1351	1646	0.69
Transmembrane Helix	1647	1668	0.67
Non-Cytoplasmic	1669	1682	0.93
Transmembrane Helix	1683	1705	0.90
Cytoplasmic	1706	1723	0.85
Transmembrane Helix	1724	1746	0.89
Non-Cytoplasmic	1747	1762	0.82
Transmembrane Helix	1763	1790	0.76
Cytoplasmic	1791	1791	0.54
Transmembrane Helix	1792	1815	0.79
Non-Cytoplasmic	1816	1915	0.96
Transmembrane Helix	1916	1936	0.95
Cytoplasmic	1937	1942	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTIKISSFF KSIFSTINGK DKSINLNNND NIKNNNNNNS IKNNNNNNIK NNNPSDNDIK  60
   61 PTEGGIDDMT LITATSLTIP PTKGGDYIES DTLKSMLIID DTNDDNSSTT TVGCGDNNEQ 120
  121 QQQQQQQQEQ QQEQQQEQHE EFKIPMIQIQ TPQINDNNIE WPTWCKDYEN RYDLRPISRN 180
  181 GLDDTSNRLN SGFKGENFVY QNTKFVSKLY WKGNSPIFGD IEVDPDNNNN FDITASPTSG 240
  241 GIKQLNIRTS YNGIVNEDDD RMLLGIVYWK NTSEGPPGCV HGGALASMFD DSMACCIRYF 300
  301 YNNNFDDLNL QKQKQKQKQQ QQEQEQPQGN RNGIVIPPIT NSKTYVVTAN LSVNYKKFVV 360
  361 LESFSSVETR IQKRDGKKIF ISSTIKDQNG VIRAESTAIW IVVKIDTPIS TTSSPPSFLS 420
  421 PLPSPTSNKL NENKLNENEN NNNNNNNNNN NNNNNNIQFD NNSCSKCHSY DTIDMLSISE 480
  481 NNNNNNNNNN NNNNNNNNNL NNNNDNDYDY DSINNIEEKF ENVSKELEGQ SIKFREIDGG 540
  541 KNNNNHDIEL GERKPENEED FKLRQYFEDS QRQKMLINHK PKKMGVSIKN LTVVGQGADN 600
  601 SVIVDNSTPF KALGKLLNPF NYFKKDKNKI NTFNILNDIN AFIEDGKMLL VLGRPGAGCS 660
  661 TLLRVIANQR ESYISVDGDV TYGNIAASDW SKYRGETLYT GEEDIHHPTL TVRETLDFTL 720
  721 KLKTPGNRLP EESKRNFRTK IYELLVSMYG LVNQGDTMVG NEFVRGLSGG ERKRITITEA 780
  781 MVSGSSITCW DCSTRGLDAA SAYDYAKSLR IMSDTLDKTT IASFYQASDS IYNLFDKVIV 840
  841 LDKGRCIYFG PIGLAKQYFL DLGFDCEPRK STPDFLTGIT NPQERIVKVG FEGRVPETSV 900
  901 DLEDAWKKSQ LFQSMKHAQL EYEKQVEQQK PSVDFKEQVL NEKSRTTSKN SEYSSSFYAQ 960
  961 TIALTQRQLS LTWGDKFTLT SRFLTILVLS FIFGGIYFQQ PLTTDGLFTR GGAIFTSIIF1020
 1021 NCILTQGELH GALSGRRILQ KHKSYALYRP SAYFVSQILI DIPFILVQVF LHSFIVYFMY1080
 1081 GFEYRADKFF IFCFTLVGVS LSSASLFRGF ANFTPSLFTA QNLMNFVFIF EVNYFGYSQT1140
 1141 PDKMHSWFKW TYYINPLAYA FKSLMINEFK GLDFSCLDSA IPFDHFNNST YSDMSHRICA1200
 1201 VPGSIEGSLS VKGENYLWDA LQINSDHRAL NVVVIFLFWL FYIGLNLFAV EYFDWTSGGY1260
 1261 THKVYKRGKA PKLNDVEEER NQNQIVKKAT DNMKDTLKMR GGLFSWKSIS YTVPVAGTNK1320
 1321 LLLDDIMGWI KPGQMTALMG SSGAGKTTLL DVLAKRKTMG TVTGESLLNG KQLEIDFERI1380
 1381 TGYVEQMDVH NPGLTVREAL RFSAKLRQEP WVPLKDKYQY VEHVLEMMEM KHLGDALIGT1440
 1441 LETGVGISVE ERKRLTIGVE LVAKPQILFL DEPTSGLDAQ SSYNIIKFIR KLADAGMPLV1500
 1501 CTIHQPSSVL FEHFDRILLL ARGGKTVYFG DIGDKSKTLT SYFERHGVRP CTESENPAEY1560
 1561 ILEATGAGIH GKTDVNWPEA WKQSSEYQNV VNELDLLRTK EELGKYILDS DLQVDGKQAP1620
 1621 PREFANGFLT QFIEVYKRLN IIYYRDVFYT MGSFAQSAVS GLVIGFTFYD LKNSSSDQQQ1680
 1681 RIFMSWEAMI LGVLLIYLVL PMFFIQKEYF KRDTASKYYS WHAFSLSMIA VEIPYVVLSS1740
 1741 TLFFIATYWT SGIDSTASAN FYYWLMHTMF SVYIVSFAQA LGAACVNIAI SIAALPIVLF1800
 1801 YLFLLCGVQI PPPAMSSFYQ DWLYHLNPAK YFLEGLITTV LKPIEVLCTD VDLIKFTAPS1860
 1861 GTDCQTYSAP FLQQATGYVV PLSNTTNECG YCIYSSGSDY FETSLGWDYG HRWRNFGIIV1920
 1921 AYWGSSILAV LFFVYLTQKP RR