YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60472658, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	56	0.97
Transmembrane Helix	57	77	0.91
Non-Cytoplasmic	78	84	0.68
Transmembrane Helix	85	105	0.85
Cytoplasmic	106	113	0.78
Transmembrane Helix	114	131	0.62
Non-Cytoplasmic	132	171	0.56
Transmembrane Helix	172	187	0.52
Cytoplasmic	188	204	0.82
Transmembrane Helix	205	227	0.87
Non-Cytoplasmic	228	235	0.81
Transmembrane Helix	236	258	0.87
Cytoplasmic	259	402	0.97
Transmembrane Helix	403	423	0.94
Non-Cytoplasmic	424	435	0.71
Transmembrane Helix	436	454	0.80
Cytoplasmic	455	461	0.73
Transmembrane Helix	462	484	0.74
Non-Cytoplasmic	485	501	0.67
Transmembrane Helix	502	518	0.33
Cytoplasmic	519	546	0.61
Transmembrane Helix	547	570	0.81
Non-Cytoplasmic	571	786	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKGSGAPLK EKVYPSVMYG NIKPIRKQPK SLPKELTIDQ ILQSLPKEVF ETSNFKSACS  60
   61 LLITILFIGL SATFITLMPS YLTPIGWMLM GASVTGLMVI GNDCIHKTFS KNPLVNSIIG 120
  121 TIVMLPLLYP FQSYKISEKN NAEKKSTAVL NGEQFKINAH TTTESTNPIR QWATGKFFWI 180
  181 LSIINWSENY FSTKNLSDKK DKTKAIVSIA IVYIFGFIFF PMMFKFVGVS GFLNYWFAPW 240
  241 LVLHFLLSTA SLLPSIPFYE ELQVASKLEK SNNNNNNNKG DKKSSEVEKY LVHITYPQWF 300
  301 EFIVKDINFS LPRQIAVSIP HYNLRKAYNS FKKSWGEYIY ECTFETELFK ELIIRSENFS 360
  361 NEIFSPFDSA PLVPDQEKKA EATAEAVSNS RTSRTVKEFL KSINWLHVII LIGIPFIGLY 420
  421 GLINVECSLK TFIWSFIYYH FTGMGITAGY HRLWAHKAYS AVLPVRIILL LFGAGAVEGS 480
  481 CRWWSRDHRA HHRYLDTDKD PYSASLGFWH SHFIWLMFKQ DPKKIGRANI DDLNADPWVM 540
  541 WQHKHYIKIA TFMGLVFPTL VAGLGWGDWA GGYFYSGVLR LVTVQHSTFL VNSLAHYLGD 600
  601 SPYDDEHTPK DSVVTAILTF GEGYHNFHHE FPNDYRNAYK FYQYDPTKWL ISAMYYLGLA 660
  661 YDLKTFSKNE IEKGMIQMHQ KHLDAKKQSI YWGINKEDLP SMTIDEFNNL VEKENKKLMI 720
  721 INKTVLDVES FVNDHPGGLA YIKMGIGKDA TSMFTGEVYA HSNAAKNLLC QFSIAKIVDN 780
  781 HDKKQQ