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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60473093, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKEDNIDNS SSSNSNSNSN NNNNEINNFG NHHHNDDNIS FSSNNNNNNN NSNKGSNINN  60
   61 SSTTTTTTST PLIGGDGGGD SCEVKRSRNI LPHEVLLTRV TFKVETPIGY VRENNVLAII 120
  121 GDSAEIGNWK SKDAPQMVNS ECTDTHLIWT IILSFPKATR INYKYIIKSN SNNSNHQNQN 180
  181 NHHHHHHHRN QLINSNGSTS SITSTSSSSS SITSKSNLVE WEASKGLSRT LSIEGIDMFV 240
  241 NDGLFGVLES GSKPWIGRGW LPEDEYQLRI QLQCDDNQSP VHLYDHLIEQ NQLVLRLHDP 300
  301 FGLSQDFHLP MTGFTELVLH THSLSSFSFS VTLLLKDGLN LPITTTTNNT TTTTTTTTTA 360
  361 TANSNIGSNG ASSPTSYPSS PNGYKVLGKS YICSNQVSTD LWGKLYTPII GEKYFPIGEF 420
  421 RCNYLVVTPF SHPQNSLSNL WHSFVEQPQT LIGHRGNGKN NFGINANAVT ENTILSFLTA 480
  481 AQFGAKMVEF DLQLTFDGVP VIFHDYEIEI ETNEGFTMKE TINRLTLEQF LKVKPTTNKS 540
  541 DLISQKLKRL KSLRISKSTS DLLSLSSCPS STSFDPSSFL ENVTQCNSNL VVSDNNNNNN 600
  601 NNNNNNNNNN NNNNNKNNDN NNNNNNKNNN TIRPSSIIHD RFSTLQDAFH LVPQEIGFMI 660
  661 EIKYPNLAMQ NLRKFKAPER NEFIDIILNI VFNETNDRRI AFLTFDPDIA ILLRTKQFRY 720
  721 PVLFLVCCDT PTFFEEFDPD VNINDNRGNS ITNAISFVKT VNLDGIVCDS QTILNNHSFV 780
  781 NLIHSDNLLL FTYGSKNVDP VNVKIQKELG VDGIIADNIT KLNKTVIELH TCNCTTYCGF 840
  841 ILDGLISAVE GDAFFNCSNS NNCVFSQNVI NQMLPVIPMT CMAGECINNN SSGSQNNNNT 900
  901 TSDNGSRNGS ENSHHNSDSS NNDNIKCPTC DCNKSTTHFM IAIIIFLVVL IILSIINIIL 960
  961 VFKKRKNNYT 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle