YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2576331
Protein type:	Globular with Signal Peptide
Type Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFASKSERKV HYSIRKFSIG VASVAVASLV MGSVVHATEN EGSTQAATSS NMAKTEHRKA  60
   61 AKQVVDEYIE KMLREIQLDR RKHTQNVALN IKLSAIKTKY LRELNVLEEK SKDELPSEIK 120
  121 AKLDAAFEKF KKDTLKPGEK VAEAKKKVEE AKKKAEDQKE EDRRNYPTNT YKTLELEIAE 180
  181 FDVKVKEAEL ELVKEEAKEF RNEGTIKQAK EKVESKKAEA TRLENIKTDR KKAEEEAKRK 240
  241 AAEEDKVKEK PAEQPQPAPA TQPEKPAPKP EKPAEQPKAE KTDDQQAEED YARRSEEEYN 300
  301 RLTQQQPPKT EKPAQPSTPK TGWKQENGMW YFYNTDGSMA TGWLQNNGSW YYLNANGAMA 360
  361 TGWLQNNGSW YYLNANGSMA TGWLQNNGSW YYLNANGAMA TGWLQYNGSW YYLNSNGAMA 420
  421 TGWLQYNGSW YYLNANGDMA TGWLQNNGSW YYLNANGDMA TGWLQYNGSW YYLNANGDMA 480
  481 TGWVKDGDTW YYLETSGAMK ASQWFKVSDK WYYVHGSSAL AINTTVYGYG VNANGEWVN

Type	Start	End	Confidence
Signal Peptide	1	37	0.95
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	539	0.99