YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sulp-7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.77
Transmembrane Helix	28	49	0.53
Non-Cytoplasmic	50	68	0.39
Transmembrane Helix	69	100	0.66
Cytoplasmic	101	120	0.66
Transmembrane Helix	121	141	0.83
Non-Cytoplasmic	142	148	0.47
Transmembrane Helix	149	171	0.68
Cytoplasmic	172	182	0.34
Transmembrane Helix	183	200	0.44
Non-Cytoplasmic	201	205	0.60
Transmembrane Helix	206	226	0.87
Cytoplasmic	227	233	0.81
Transmembrane Helix	234	255	0.88
Non-Cytoplasmic	256	285	0.91
Transmembrane Helix	286	306	0.89
Cytoplasmic	307	322	0.85
Transmembrane Helix	323	343	0.92
Non-Cytoplasmic	344	357	0.76
Transmembrane Helix	358	377	0.90
Cytoplasmic	378	384	0.67
Transmembrane Helix	385	403	0.92
Non-Cytoplasmic	404	419	0.77
Transmembrane Helix	420	446	0.90
Cytoplasmic	447	582	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKQNQSWK NYIPITKWLP NYSISENLIN DIIGGVTVGI LNVPQGMAYA SLVGLKPVYG  60
   61 LYTSLFPSLI YMFFGTSRHV ALGVFAVVSL MSGSCNLRVT QEIISNNGTN MTSTEVEAIS 120
  121 INVVKSLGLA VGLIQIIMGL FKANYLISYL SDQIILGFTT GAAVHVLTAQ LNKILGVALP 180
  181 RHSGIGKLFF IYQDLITAII GEKVNVITFG ASVVAIVILY ISKYILTPRF CAKTLVPIPF 240
  241 DLFLIVIGTI IADWFQVEER WGVKVVGDIP TGFPNPALPD LFMFRHVIGD ALAIAIVSVV 300
  301 VTVSMGKVIA KKHNYEIDVR QEFFALGIVA STCSMFPCWP ATTALARTLI NDNAGTKTQI 360
  361 SAIFSALVLT LVLFFIGQYL EGLPMCLLSC IVIVALRGMF LHLQNFVTLW RVSKYDWAIF 420
  421 AITFFATVCL DVVPGLFIGT IFALLLSILR IQRSSPTLLD DDCAESGKTF VVFFASSLFY 480
  481 FNCERFDRKI QKIVAQITGE KDISKAAVST EDMAMIDSHK PQKTVIFDMN GVSSIDLSGA 540
  541 NLLVKIQKDL ITNDISFKIR NPSDHIFSFL TGLPNTDQLF ES