YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ABCG2_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	395	0.60
Transmembrane Helix	396	417	0.87
Cytoplasmic	418	426	0.51
Transmembrane Helix	427	448	0.94
Non-Cytoplasmic	449	467	0.54
Transmembrane Helix	468	495	0.80
Cytoplasmic	496	503	0.50
Transmembrane Helix	504	522	0.73
Non-Cytoplasmic	523	531	0.52
Transmembrane Helix	532	552	0.91
Cytoplasmic	553	558	0.69
Transmembrane Helix	559	576	0.71
Non-Cytoplasmic	577	640	0.92
Transmembrane Helix	641	662	0.94
Cytoplasmic	663	1058	0.96
Transmembrane Helix	1059	1076	0.92
Non-Cytoplasmic	1077	1086	0.84
Transmembrane Helix	1087	1108	0.92
Cytoplasmic	1109	1127	0.83
Transmembrane Helix	1128	1150	0.90
Non-Cytoplasmic	1151	1167	0.87
Transmembrane Helix	1168	1192	0.86
Cytoplasmic	1193	1199	0.78
Transmembrane Helix	1200	1222	0.90
Non-Cytoplasmic	1223	1300	0.90
Transmembrane Helix	1301	1323	0.91
Cytoplasmic	1324	1328	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPEIGNDE IPLQEFGQKS FAADNTIGGM QSISYDNSGA PMGLYKEKKG MYVTARNLSM  60
   61 SIGTEKKGDK RNILSDLNFF LKPGSMVLIL GSPGCGKTSV MKALANQLHS ETVSGSLLFN 120
  121 GKAANKSTHH RDVAYVVQGD HHMAPFTVRE TFKFSADLQM SEGTSEEEKN ARVDYILKTL 180
  181 DLTRQQDTVV GNEFLRGVSG GQKKRVTIGV EMVKDAGLFL MDEPSTGLDS TTTLELMKHF 240
  241 RELSNVNQVS SLVALLQPGV EVTKLFDFLM IMNAGHMVYF GPMSDAISYF EGLGFKLPKH 300
  301 HNPAEFFQEI VDEPELYFEG EGEPPLRGAE EFANAYKNSA MFQSIVNDLD NTQPDLTFCK 360
  361 DSSHLPKYPT PLSYQIRLAS IRAFKMLISS QVAVRMRIIK SIVMGLILGS LFYGLDLNQT 420
  421 DGNNRSGLIF FSLLFIVFSG MGAIAILFEQ REVFYIQKDG KYYKTFAFFL SLIFSEIPIA 480
  481 LLETVVFCVL VYWMCGLQAN AEKFIYFLLM NFVGDLAFQS FFKMVSAFAP NATLASVIAP 540
  541 AALAPFILFS GFMAPKRSIG GWWIWIYWIS PIKYAFEGLM SNEHHGLIYS CDDSETIPPR 600
  601 NTPNFELPYP RGSGNSSICQ ITRGDQFLDQ LGMPQNNWFK WIDLLIVFAF GALFSFGMYF 660
  661 FLKNVHVDHR ASDPKNDKRS KKASKRSKKI KDSKVDIKEN RMVKAQKEIP IGCYMQWKDL 720
  721 VYEVDVKKDG KNQRLRLLNE INGYVKPGML LALMGPSGAG KSTLLDVLAN RKTGGHTKGQ 780
  781 ILINGQERTK YFTRLSAYVE QFDVLPPTQT VKEAILFSAK TRLPSDMPNE EKIKFVENII 840
  841 ETLNLLKIQN KQIGHGEEGL SLSQRKRVNI GVELASDPQL LFLDEPTSGL DSSAALKVMN 900
  901 LIKKIASSGR SIICTIHQPS TSIFKQFDHL LLLKRGGETV YFGPTGDKSA DLLGYFENHG 960
  961 LICDPLKNPA DFILDVTDDV IETTLDGKPH QFHPVQQYKE SQLNSDLLAK IDAGVMPVGT1020
 1021 PVPEFHGVYS SSYQTQFVEL GKRSWLAQVR RVQNIRTRLM RSLFLGVVLG TLFVRMEETQ1080
 1081 ENIYNRVSIL FFSLMFGGMS GMSSIPIVNM ERGVFYREQA SGMYSIPIYL FTFIVTDLPW1140
 1141 VFLSAIIYTV PMYFISGLRL DPNGAPFFYH SFISFTTYFN FSMLAMVFAT VLPTDEIAHA1200
 1201 LGGVALSISS LFAGFMIPPA SIAKGWHWFY QLDPTTYPLA IVMINEFQDL EFHCTSSESV1260
 1261 TIPNVLTVNG TYIDVGPICP ITNGNQILQR YEMKPEDKYK FLAVIFGYSV FFFICIFIAL1320
 1321 KFIRHQTK