YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19386936
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.97
Transmembrane Helix	53	74	0.87
Non-Cytoplasmic	75	93	0.72
Transmembrane Helix	94	115	0.86
Cytoplasmic	116	126	0.86
Transmembrane Helix	127	148	0.92
Non-Cytoplasmic	149	154	0.66
Transmembrane Helix	155	176	0.82
Cytoplasmic	177	183	0.74
Transmembrane Helix	184	206	0.90
Non-Cytoplasmic	207	213	0.72
Transmembrane Helix	214	234	0.91
Cytoplasmic	235	269	0.86
Transmembrane Helix	270	291	0.91
Non-Cytoplasmic	292	296	0.86
Transmembrane Helix	297	317	0.95
Cytoplasmic	318	337	0.86
Transmembrane Helix	338	358	0.94
Non-Cytoplasmic	359	371	0.79
Transmembrane Helix	372	395	0.85
Cytoplasmic	396	401	0.75
Transmembrane Helix	402	420	0.91
Non-Cytoplasmic	421	430	0.69
Transmembrane Helix	431	451	0.63
Cytoplasmic	452	468	0.60
Transmembrane Helix	469	488	0.54
Non-Cytoplasmic	489	542	0.46
Transmembrane Helix	543	562	0.90
Cytoplasmic	563	602	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEDHTKADN LSEKDPHSPE RSDSSSHEDA HAREEEESSD DDGALDGKPA SLIAIVMIAL  60
   61 SLIGLQLAVF LSALDTTIVT VALPAISAHF NSTAAYTWVG SAYLLANAAS TPIWGKLADI 120
  121 FGRKPMLLLA NALFMIGSLV CALSINVGML ITARAIQGAA GGGLLTLVDT IIGDLFSLRT 180
  181 RGTYLGMIGG VWAIACALGP IVGGAFTSSV TWRWCFYINL PIDGLAFGII FFFLKLKTPK 240
  241 TPILEGFAAI DWAGSFFVCI RRYSSTASRL TFSQIIGGTL MFLFGLQYGG ITFPWDSATV 300
  301 ICLLVFGVVC IVLFGLVEWK FARFPIIPLR LFQYRNNCGA LLVAFFHSFV FTSAFYYLPL 360
  361 YFQAVKGATP ILAGVYILPA VLSTGVSAAA TGAFIGNTGN YLIPMYFGMS MMILGYGLLI 420
  421 NFDAGSGWAK LIIYQLIAGI GNGPNFQAPL VALQTKIKQS DIATGTATFN FVRNIATAIS 480
  481 VVAGQVLYQN QLKKMTSTLQ QLGPAASLIA AGDAGANTQA INALPTPQRD LARSAIADAL 540
  541 SPMWIMYTAF AAAGLFCILL VSKTELTTTH EVTEVGLEAQ KKAEAERKAE RQAKDLEKAQ 600
  601 KS