YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42046
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADYQGKNVV IIGLGLTGLS CVDFFLAAGV TPRVMDTRMT PPGLDKLPEA VERHTGSLND  60
   61 EWLMAADLIV ASPGIALAHP SLSAAADAGI EIVGDIELFC REAQAPIVAI TGSNGKSTVT 120
  121 TLVGEMAKAA GVNVGVGGNI GLPALMLLDD ECELYVLELS SFQLETTSSL QAVTATILNV 180
  181 TEDHMDRYPF GLQQYRAAKL RIYENAKVCV VNADDALTMP IRGADERCVS FGVNMGDYHL 240
  241 NHQQGETWLR VKGEKVLNVK EMKLSGQHNY TNALARVALA DAAGLPRASS LKALTTFTGL 300
  301 PHRFEVVLEH NGVRWINDSK ATNVGSTEAA LNGLHVDGTL HLLLGGDGKS ADFSPLARYL 360
  361 NGDNVRLYCF GRDGAQLAAL RPEVAEQTET MEQAMRLLAP RVQPGDMVLL SPACASLDQF 420
  421 KNFEQRGNEF ARLAKELG

Type	Start	End	Confidence
Cytoplasmic	1	8	0.63
Transmembrane Helix	9	30	0.70
Non-Cytoplasmic	31	438	0.89