YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1926319
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDYEVLRFI WWLLIGILLI GFAVADGFDM GVGMLTRFLG RNDTERRIMI NAIAPHWDGN  60
   61 QVWLITAGGA LFAAWPMVYA AAFSGFYVAM ILVLASLFFR PVGFDYRSKI EDNRWRNMWD 120
  121 WGIFVGSFVP PLVIGVAFGN LLQGVPFHVD EYLRLYYTGN FFQLLNPFGL LAGIVSVAMI 180
  181 LTQGATYLQM RTVGELHLRT RSVSTVPALV TLICFALAGV WVYYGIDGYV VKSVMDHTGP 240
  241 SNPLTKEVAR EAGAWMVNFN NMPALWAIPA LGPWLPLLTV ISTKADKGAW AFLFSSLTLA 300
  301 CIILTAGIAM FPFIMPSSTA MNASLTMWDA TSSTLTLNVM TYVAIVFVPI ILAYTTWCYW 360
  361 KMFGRITRED IEKNTHSLY

Type	Start	End	Confidence
Cytoplasmic	1	8	0.62
Transmembrane Helix	9	30	0.88
Non-Cytoplasmic	31	77	0.63
Transmembrane Helix	78	99	0.89
Cytoplasmic	100	118	0.87
Transmembrane Helix	119	142	0.88
Non-Cytoplasmic	143	163	0.93
Transmembrane Helix	164	187	0.85
Cytoplasmic	188	202	0.90
Transmembrane Helix	203	225	0.90
Non-Cytoplasmic	226	261	0.98
Transmembrane Helix	262	282	0.91
Cytoplasmic	283	289	0.87
Transmembrane Helix	290	314	0.90
Non-Cytoplasmic	315	336	0.89
Transmembrane Helix	337	358	0.92
Cytoplasmic	359	379	0.95