YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5912462
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLKAFFPTC CVSTDSGLLV GRWVPEQSSA VVLAVLHFPF IPIQVKQLLA QVRQASQVGV  60
   61 AVLGTWCHCR QEPEESLGRF LESLGAVFPH EPWLRLCRER GGTFWSCEAT HRQAPTAPGA 120
  121 PGEDQVMLIF YDQRQVLLSQ LHLPTVLPDR QAGATTASTG GLAAVFDTVA RSEVLFRSDR 180
  181 FDEGPVRLSH WQSEGVEASI LAELARRASG PICLLLASLL SLVSAVSACR RRVFKLWPLS 240
  241 FLGSKLSTCE QLRHRLEHLT LIFSTRKAEN PAQLMRKANT VASVLLDVAL GLMLLSWLHG 300
  301 RSRIGHLADA LVPVADHVAE ELQHLLQWLM GAPAGLKMNR ALDQVLGRFF LYHIHLWISY 360
  361 IHLMSPFVEH ILWHVGLSAC LGLTVALSLL SDIIALLTFH IYCFYVYGAR LYCLKIHGLS 420
  421 SLWRLFRGKK WNVLRQRVDS CSYDLDQLFI GTLLFTILLF LLPTTALYYL VFTLLRLLVV 480
  481 AVQGLIHLLV DLINSLPLYS LGLRLCRPYR LAAGVKFRVL RHEAGRPLRL LMQINPLPYS 540
  541 RVVHTYRLPS CGCHPKHSWG ALCRKLFLGE LIYPWRQRGD KQD

Type	Start	End	Confidence
Non-Cytoplasmic	1	207	0.64
Transmembrane Helix	208	229	0.80
Cytoplasmic	230	279	0.64
Transmembrane Helix	280	300	0.82
Non-Cytoplasmic	301	344	0.56
Transmembrane Helix	345	364	0.66
Cytoplasmic	365	370	0.44
Transmembrane Helix	371	401	0.74
Non-Cytoplasmic	402	405	0.42
Transmembrane Helix	406	426	0.59
Cytoplasmic	427	447	0.80
Transmembrane Helix	448	471	0.86
Non-Cytoplasmic	472	478	0.59
Transmembrane Helix	479	501	0.73
Cytoplasmic	502	583	0.87