YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SEC11_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDIISKINP FSSIPKHQIA QQIVNFGLIV ATALMIWKGL MIFSGSESPI VVVLSGSMIP  60
   61 AFFRGDLLYL NMEDGPFRVG EIVVFKIEGK EIPIVHRILQ IHEKEDGLYD IRTKGDNNNV 120
  121 DDVGLYSPGQ RWLSRDHIIG RAKGFLPSVG MVTIVMHDYP QLKFFLVFVL AVFVLSTRE

Type	Start	End	Confidence
Cytoplasmic	1	20	0.77
Transmembrane Helix	21	41	0.87
Non-Cytoplasmic	42	48	0.59
Transmembrane Helix	49	68	0.75
Cytoplasmic	69	138	0.72
Transmembrane Helix	139	157	0.43
Non-Cytoplasmic	158	158	0.44
Transmembrane Helix	159	177	0.50
Cytoplasmic	178	179	0.52