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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|3980256
Protein type: Transmembrane
Type Confidence: 0.84
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTNLYRLVF SHVRGMLVPV SEHCTVGNTF CGRTRGQARS GARATSLSVA PNALAWALML  60
   61 ACTGLPLVTH AQGLVPQGQT QVLQGGNKVP VVNIADPNSG GVSHNKFQQF NVANPGVVFN 120
  121 NGLTDGVSRI GGALTKNPNL TRQASAILAE VTDTSPSRLA GTLEVYGKGA DLIIANPNGI 180
  181 SVNGLSTLNA SNLTLTTGRP SVNGGRIGLD VQQGTVTIER GGVNATGLGY FDVVARLVKL 240
  241 QGAVSSKQGK PLADIAVVAG ANRYDHATRR ATPIAAGARG AAAGAYAIDG TAAGAMYGKH 300
  301 ITLVSSDSGL GVRQLGSLSS PSAITVSSQG EIALGDATVQ RGPLSLKGAG VVSAGKLASG 360
  361 GGAVNVAGGG AVKIASASSV GNLAVQGGGK VQATLLNAGG TLLVSGRQAV QLGAASSRQA 420
  421 LSVNAGGALK ADKLSATRRV DVDGKQAVAL GSASSNALSV RAGGALKAGK LSATGRLDVD 480
  481 GKQAVTLGSV ASDGALSVSA GGNLRANELV SSAQLEVRGQ REVALDDASS ARGMTVVAAG 540
  541 ALAARNLQSK GAIGVQGGEA VSVANANSDA ELRVRGRGQV DLHDLSAARG ADISGEGRVN 600
  601 IGRARSDSDV KVSAHGALSI DSMTALGAIG VQAGGSVSAK DMRSRGAVTV SGGGAVNLGD 660
  661 VQSDGQVRAT SAGAMTVRDV AAAADLALQA GDALQAGFLK SAGAMTVNGR DAVRLDGAHA 720
  721 GGQLRVSSDG QAALGSLAAK GELTVSAARA ATVAELKSLD NISVTGGERV SVQSVNSASR 780
  781 VAISAHGALD VGKVSAKSGI GLEGWGAVGA DSLGSDGAIS VSGRDAVRVD QARSLADISL 840
  841 GAEGGATLGA VEAAGSIDVR GGSTVAANSL HANRDVRVSG KDAVRVTAAT SGGGLHVSSG 900
  901 RQLDLGAVQA RGALALDGGA GVALQSAKAS GTLHVQGGEH LDLGTLAAVG AVDVNGTGDV 960
  961 RVAKLVSDAG ADLQAGRSMT LGIVDTTGDL QARAQQKLEL GSVKSDGGLQ AAAGGALSLA1020
 1021 AAEVAGALEL SGQGVTVDRA SASRARIDST GSVGIGALKA GAVEAASPRR ARRALRQDFF1080
 1081 TPGSVVVRAQ GNVTVGRGDP HQGVLAQGDI IMDAKGGTLL LRNDALTENG TVTISADSAV1140
 1141 LEHSTIESKI SQSVLAAKGD KGKPAVSVKV AKKLFLNGTL RAVNDNNETM SGRQIDVVDG1200
 1201 RPQITDAVTG EARKDESVVS DAALVADGGP IVVEAGELVS HAGGIGNGRN KENGASVTVR1260
 1261 TTGNLVNKGY ISAGKQGVLE VGGALTNEFL VGSDGTQRIE AQRIENRGTF QSQAPAGTAG1320
 1321 ALVVKAAEAI VHDGVMATKG EMQIAGKGGG SPTVTAGAKA TTSANKLSVD VASWDNAGSL1380
 1381 DIKKGGAQVT VAGRYAEHGE VSIQGDYTVS ADAIALAAQV TQRGGAANLT SRHDTRFSNK1440
 1441 IRLMGPLQVN AGGPVSNTGN LKVREGVTVT AASFDNETGA EVMAKSATLT TSGAARNAGK1500
 1501 MQVKEAATIV AASVSNPGTF TAGKDITVTS RGGFDNEGKM ESNKDIVIKT EQFSNGRVLD1560
 1561 AKHDLTVTAS GQADNRGSLK AGHDFTVQAQ RIDNSGTMAA GHDATLKAPH LRNTGQVVAG1620
 1621 HDIHIINSAK LENTGRVDAR NDIALDVADF TNTGSLYAEH DATLTLAQGT QRDLVVDQDH1680
 1681 ILPVAEGTLR VKAKSLTTEI ETGNPGSLIA EVQENIDNKQ AIVVGKDLTL SSAHGNVANE1740
 1741 ANALLWAAGE LTVKAQNITN KRAALIEAGG NARLTAAVAL LNKLGRIRAG EDMHLDAPRI1800
 1801 ENTAKLSGEV QRKGVQDVGG GEHGRWSGIG YVNYWLRAGN GKKAGTIAAP WYGGDLTAEQ1860
 1861 SLIEVGKDLY LNAGARKDEH RHLLNEGVIQ AGGHGHIGGD VDNRSVVRTV SAMEYFKTPL1920
 1921 PVSLTALDNR AGLSPATWNF QSTYELLDYL LDQNRYEYIW GLYPTYTEWS VNTLKNLDLG1980
 1981 YQAKPAPTAP PMPKAPELDL RGHTLESAEG RKIFGEYKKL QGEYEKAKMA VQAVEAYGEA2040
 2041 TRRVHDQLGQ RYGKALGGMD AETKEVDGII QEFAADLRTV YAKQADQATI DAETDKVAQR2100
 2101 YKSQIDAVRL QAIQPGRVTL AKALSAALGA DWRALGHSQL MQRWKDFKAG KRGAEIAFYP2160
 2161 KEQTVLAAGA GLTLSNGAIH NGENAAQNRG RPEGLKIGAH SATSVSGSFD ALRDVGLEKR2220
 2221 LDIDDALAAV LVNPHIFTRI GAAQTSLADG AAGPALARQA RQAPETDGMV DARGLGSADA2280
 2281 LASLASLDAA QGLEVSGRRN AQVADAGLAG PSAVAAPAVG AADVGVEPVT GDQVDQPVVA2340
 2341 VGLEQPVATV RVAPPAVALP RPLFETRIKF IDQSKFYGSR YFFEQIGYKP DRAARVAGDN2400
 2401 YFDTTLVREQ VRRALGGYES RLPVRGVALV AKLMDSAGTV GKALGLKVGV APTAQQLKQA2460
 2461 DRDFVWYVDT VIDGQKVLAP RLYLTEATRQ GITDQYAGGG ALIASGGDVT VNTDGHDVSS2520
 2521 VNGLIQGRSV KVDAGKGKVV VADSKGAGGG IEADDEVDVS GRDIGIEGGK LRGKDVRLKA2580
 2581 DTVKVATSMR YDDKGRLAAR GDGALDAQGG QLHIEAKRLE TAGATLKGGK VKLDVDDVKL2640
 2641 GGVYEAGSSY ENKSSTPLGS LFAILSSTTE TNQSAHANHY GTRIEAGTLE GKMQNLEIEG2700
 2701 GSVDAAHTDL SVARDARFKA AADFAHAEHE KDVRQLSLGA KVGAGGYEAG FSLGSESGLE2760
 2761 AHAGRGMTAG AEVKVGYRAS HEQSSETEKS YRNANLNFGG GSVEAGNVLD IGGADINRNR2820
 2821 YGGAAKGNAG TEEALRMRAK KVESTKYVSE QTSQSSGWSV EVASTASARS SLLTAATRLG2880
 2881 DSVAQNVEDG REIRGELMAA QVAAEATQLV TADTAAVALS AGISADFDSS HSRSTSQNTQ2940
 2941 YLGGNLSIEA TEGDATLVGA KFGGGDQVSL KAAKSVNLMA AESTFESYSE SHNFHASADA3000
 3001 NLGANAVQGA VGLGLTAGMG TSHQITNETG KTYAGTSVDA ANVSIDAGKD LNLSGSRVRG3060
 3061 KHVVLDVEGD INATSKQDER NYNSSGGGWD ASAGVAIQNR TLVAPVGSAG FNFNTEHDNS3120
 3121 RLTNDGAAGV VASDGLTGHV KGDANLTGAT IADLSGKGNL KVDGAVNAQN LKDYRDKDGG3180
 3181 SGGLNVGISS TTLAPTVGVA FGRVAGEDYQ AEQRATIDVG QTKDPARLQV GGGVKGTLNQ3240
 3241 DAAQATVVQR NKHWAGGGSE FSVAGKSLKK KNQVRPVETP TPDVVDGPPS RPTTPPASPQ3300
 3301 PIRATVEVSS PPPVSVATVE VVPRPKVETG SAASASAGGA QVVPVTPPKV EVAKVEVVPR3360
 3361 PKVETAQPLP PRPVVAEKVT TPAVQPQLAK VETVQPVKPE TTKPLPKPLP VAKVTKAPPP3420
 3421 VVETAQPLPP VKPQKATPGP VAEVGKATVT TVQVQSAPPK PAPVAKQPAP APKPKPKPKP3480
 3481 KAERPKPGKT TPLSGRHVVQ QQVQVLQRQA SDINNTKSLP GGKLPKPVTV KLTDENGKPQ3540
 3541 TYTINRREDL MKLNGKVLST KTTLGLEQTF RLRVEDIGGK NYRVFYETNK 

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