YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27475612
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDPYGFGWI TCTLITLAAL YNFLFSRKNH SDSTTTENIT TATGECRSFN PNGDVDIIIV  60
   61 GAGVAGSALA YTLGKDGRRV LIIERDLNEP DRIVGELLQP GGYLKLIELG LDDCVEKIDA 120
  121 QKVFGYALFK DGKHTRLSYP LEKFHSDIAG RSFHNGRFIL RMREKAASLP NVRLEQGTVT 180
  181 SLLEENGTIK GVQYKTKDAQ EFSACAPLTI VCDGCFSNLR RSLCNPKVEV PSCFVGLVLE 240
  241 NCELPCADHG HVILGDPSPV LFYPISSTEI RCLVDVPGQK VPSISNGEMA KYLKTVVAPQ 300
  301 VPPELHAAFI AAVDKGHIRT MPNRSMPADP YPTPGALLMG DAFNMRHPLT GGGMTVALSD 360
  361 IVVLRNLLKP LRDLNDASSL CKYLESFYTL RKPVASTINT LAGALYKVFC ASPDPARKEM 420
  421 RQACFDYLSL GGLFSEGPVS LLSGLNPCPL SLVLHFFAVA IYGVGRLLLP FPSPKRLWIG 480
  481 IRLIASASGI ILPIIKAEGI RQMFFPATVP AYYRAPPDA

Type	Start	End	Confidence
Cytoplasmic	1	4	0.51
Transmembrane Helix	5	25	0.84
Non-Cytoplasmic	26	56	0.55
Transmembrane Helix	57	73	0.34
Cytoplasmic	74	423	0.57
Transmembrane Helix	424	442	0.49
Non-Cytoplasmic	443	450	0.61
Transmembrane Helix	451	469	0.90
Cytoplasmic	470	477	0.80
Transmembrane Helix	478	497	0.90
Non-Cytoplasmic	498	519	0.81