YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|8980432
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDNRGLGVF GVSMCGAAQE IEQLSRESSH YSLSTGILPS LGARSNRRVK LKRFIISPYD  60
   61 RQYRLWETFL VVLVVYTAWV SPFEFGFLGK PAGPLAKTDN VVNGFFAIDI ILTFFVAFLD 120
  121 RTTYLLVDEH KKIAWKYMST WFLFDVISTI PSELAVKISP KPLRQYGLFN MLRLWRLRRV 180
  181 SALFARLEKD RNFNYFWVRC AKLVCVTLFA VHCAGCFYYL IAVHYPDPKR TWIGVAMDDF 240
  241 LNQSLWIRYV TSIYWSITTL TTVGYGDLHP ENTREMIFDI FYMLFNLGLT AYLIGNMTNL 300
  301 VVHGTSRTRK FRDTIQAASS FAQRNQLPAR LQDQMLAHLC LKFRTDSEGL QQQETLESLP 360
  361 KAIRSSVSHF LFYSLVDKVY LFRGVSNDLL FQLVSEMKAE YFPPKEDVIL QNEAPTDFYI 420
  421 LVTGAVDLVV LKNGVEQVVG EVRAGDLCGE IGVLCYRPQL FTVRTKRLCQ LLRMNRTTFL 480
  481 NIVQANVGDG TIIMNNLLQH LKEMKNPIME GVLLETEHML ARGRMDLPLT LCFATLRSDD 540
  541 LLLHHLLKRG LDPNESDNNG RSALHIAASK GIENCVVLLL DFGADPNSRD SEGNVPLWEA 600
  601 IMGKHESVIQ LLVDNGAKLS AGDVGHFACV AVEQNNLSLL KEIVRYGGDV TLPKINGSSA 660
  661 LHVAVCEGNI EIVKYLLDRG ANVDQPDEHN WTPRDLAEQQ GHEDIKELFE SRVMMRTRSV 720
  721 DPIPEERGVR FLGRFKSEPT ISPASHGVSF LGLDGSLGRS RPRRRSNNFH NSLFGIMSAK 780
  781 QTNASDVLLS ANDTNVSSTT TKTYAPRVIV CCPEKGDNGG KLILLPQSFK ELLQIGSSRY 840
  841 GISQAKVVSK DGAEIDEIEL IRDGDRLVFV RDKENNIDEA KSS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle