YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6689014
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.87
Transmembrane Helix	7	27	0.93
Cytoplasmic	28	36	0.82
Transmembrane Helix	37	57	0.92
Non-Cytoplasmic	58	87	0.86
Transmembrane Helix	88	107	0.95
Cytoplasmic	108	116	0.88
Transmembrane Helix	117	137	0.92
Non-Cytoplasmic	138	143	0.81
Transmembrane Helix	144	164	0.94
Cytoplasmic	165	175	0.93
Transmembrane Helix	176	198	0.87
Non-Cytoplasmic	199	219	0.90
Transmembrane Helix	220	241	0.87
Cytoplasmic	242	257	0.85
Transmembrane Helix	258	278	0.92
Non-Cytoplasmic	279	285	0.68
Transmembrane Helix	286	308	0.90
Cytoplasmic	309	319	0.80
Transmembrane Helix	320	340	0.81
Non-Cytoplasmic	341	350	0.63
Transmembrane Helix	351	370	0.83
Cytoplasmic	371	389	0.82
Transmembrane Helix	390	411	0.88
Non-Cytoplasmic	412	422	0.82
Transmembrane Helix	423	446	0.85
Cytoplasmic	447	543	0.92
Transmembrane Helix	544	565	0.90
Non-Cytoplasmic	566	602	0.89
Transmembrane Helix	603	624	0.88
Cytoplasmic	625	705	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TYQYAWIIPX VPLPVPMLIG VGLLLFPTAT KSLRRMWAFP SILLLSIVMI FSTNLSIQQI  60
   61 DSSSIYQYVW SWTLDNDFSL EFGYLIDPLT SIMLMLITTV GIMVLIYSDN YMAHDQGYLR 120
  121 FFAYMSFFST SMLGLVTSSN LIQIYIFWEL VGMCSYLLIG FWFTRPPAAN ACQKAFVTNR 180
  181 VGDFGLLLGI LGFYWITGSF EFRDLFEIFN NLIYNNEGNS TFVSLCALLL FAGAVAKSAQ 240
  241 FPLHVWLPDA MEGPTPISAL IHAATMVAAG IFLVARLLPL FIVIPYIMNF ISLIGIITVL 300
  301 LGATLALAQK DIKRGLAYST MSQLGYMMLA LGMGSYRSAL FHLITHAYSK ALLFLGSGSV 360
  361 IHSMETVVGY SPDKSQNMVL MGGLTKHVPI TKTSFLLGTL SLCGIPPLAC FWSKDEILND 420
  421 SWLYSPIFAI IAWATAGLTA FYMFRIYLLT FEGHLNVHFT NYSGNKNTSL YSISLWGKGC 480
  481 SKRINKNFRL LRMNNNESSS FFSKKTYRSD ENVRKRNGGR PFINIDDFEN KKPYSYPYES 540
  541 DNTMLLPLLV LVLFTLFVGS LGIPFNQEGT DLDILSKWLA PSINVLHQKS KDSTDWYEFF 600
  601 TDALFSVSIA YFGIFIASLL YNPIYSSFKN FDLINSFVKT GPNRSXWDKI LNGLYDWSYN 660
  661 RAYIDAFYTT SFTGAIRGLA QLTHFFDRRX IDGITNGVGV MSFFV