YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12656268
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.37
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	31	0.36
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	544	0.82
Transmembrane Helix	545	566	0.94
Cytoplasmic	567	575	0.92
Transmembrane Helix	576	598	0.88
Non-Cytoplasmic	599	617	0.78
Transmembrane Helix	618	642	0.83
Cytoplasmic	643	662	0.93
Transmembrane Helix	663	683	0.94
Non-Cytoplasmic	684	705	0.92
Transmembrane Helix	706	731	0.86
Cytoplasmic	732	752	0.93
Transmembrane Helix	753	776	0.89
Non-Cytoplasmic	777	1050	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLPSNYTLF SHIFRFSLLF SPVLFGYFCN GYKKRKTNNP HRQLNGNALV SLDGDCLGHL  60
   61 QKLRTLRLEG NLFYRIPTNA LAGLRTLEAL NLGSNLLTII NDEDFPRMPN LIVLLLKRNQ 120
  121 IMKISAGALK NLTALKVLEL DDNLISSLPE GLSKLSQLQE LSITSNRLRW INDTELPRSM 180
  181 QMLDMRANPL STISPGAFRG MSKLRKLILS DVRTLRSFPE LEACHALEIL KLDRAGIQEV 240
  241 PANLCRQTPR LKSLELKTNS LKRIPNLSSC RDLRLLDLSS NQIEKIQGKP FSGLKQLNDL 300
  301 LLSYNRIKAL PQDAFQGIPK LQLLDLEGNE ISYIHKEAFS GFTALEDLNL GNNIFPELPE 360
  361 SGLRALLHLK TFNNPKLREF PPPDTFPRIQ TLILSYAYHC CAFLPLVAMS SQKKTSQVQE 420
  421 AVLFPSDAEF DTTLWNNSMM NIWPQMHNLS KQLGASMHDP WETAINFNEE QLQTQTGGQI 480
  481 ATSYMEEYFE EHDVSGPATG YGFGTGLFSG MSTEDFQPGS VQCLPMPGPF LPCADLFDWW 540
  541 TLRCGVWVVF LLSLLGNGTV VFVLLCSRSK MDVPRFLVCN LAAADFFMGI YLGILAIVDA 600
  601 ATLGEFRMFA IPWQMSVLCQ LSGFLAVLSS ELSVYTLAVI TLERNYAITH AIHLNKRLSL 660
  661 KQAGYIMSVG WVFALIMALM PLVGVSDYRK FAVCLPFETT TGPASLTYVI SLMFINGCAF 720
  721 LTLMGCYLKM YWAIRGSQAW NTNDSRIAKR MALLVFTDFL CWSPIAFFSI TAIFGLQLIS 780
  781 LEQAKIFTVF VLPLNSCCNP FLYAIMTKQF KKDCVTLCKH FEESRVVGGG GPGGRGAVAR 840
  841 TKRGDLPPPL LPAAAVAHPP GCRCLRMLPS EMPNWHKMEQ TPSMWQRLRT FCCGENRRRR 900
  901 KQRRQPQQRR QRAYTAAAAN PYQYQFAELR QQRQNRASSI SSENFCSSRS SSWRHGPPSS 960
  961 APVPPGNCSM PLKMLEPHAH PHGHGRRRHS AWLITRKTSQ DSNLSSSRND SSASATTAST1020
 1021 STFRLSRSSA GSSTPLPSII GKWQTQNINI