YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4138679
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	62	0.96
Transmembrane Helix	63	84	0.87
Non-Cytoplasmic	85	88	0.61
Transmembrane Helix	89	109	0.74
Cytoplasmic	110	144	0.74
Transmembrane Helix	145	170	0.75
Non-Cytoplasmic	171	212	0.73
Transmembrane Helix	213	235	0.93
Cytoplasmic	236	243	0.80
Transmembrane Helix	244	264	0.86
Non-Cytoplasmic	265	270	0.80
Transmembrane Helix	271	291	0.89
Cytoplasmic	292	309	0.91
Transmembrane Helix	310	331	0.95
Non-Cytoplasmic	332	349	0.93
Transmembrane Helix	350	371	0.87
Cytoplasmic	372	412	0.93
Transmembrane Helix	413	433	0.90
Non-Cytoplasmic	434	438	0.70
Transmembrane Helix	439	458	0.86
Cytoplasmic	459	469	0.84
Transmembrane Helix	470	495	0.84
Non-Cytoplasmic	496	509	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQRSRTLPS KIYQGVIEER KDGRHYIELE PLPKMETETK PITIQSKCLD DDGRVKRTGT  60
   61 FWTASAHIIT AVIGSGVLSL SWAIAQLGWA VGPVVMVLFA VVNLYTSTLL TQCYRSDDSV 120
  121 AGPRNYTYTD AVKSILGGKK FKICGVIQYV NLFGVAIGYT IAASVSMMAI KRSNCYHESH 180
  181 GNDPCHMSSN VYMIAFGIAE VILSQIPDFD QVWWLSIVAA IMSFTYSAVG LGLGVAKVAE 240
  241 NGTFHGRLMG ISIGTVTPAG TVTGTQKVWR SLQALGAMAF AYSFSIILIE IQDTIKSPPA 300
  301 EHKTMKKATM LSIMVTTVFY ILCGSMGYAA FGDHVPGNLL TGFGFYNPYW LLDIANFAIV 360
  361 VHLVGAYQVF SQPFFAFVEK WSAHKWPKNK FVTEEYDIPI PCIGVYKLNL FRLIWRTIFV 420
  421 LLTTLIAMLL PFFNDVVGLL GAFGFWPLTV YFPIDMYISQ KKIGRWTNRW LGLQMLSGCC 480
  481 LIISTLAAVG SIAGVVLDLK TYKPFKTSY