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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PDR1_NICPL
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPADLSNLR GRSLRASIRG SMRGSIRENS NSIWRNNGAE VFSRSARDED DEEALKWAAL  60
   61 EKLPTYDRLR KGILFGSQGA AAEVDVDDSG VLERKNLLER LVKVADEDNE KFLLKLKNRI 120
  121 DRVGIDFPSI EVRFEHLNID ADAYVGSRAL PTFTNFISNF VEGLLDSIHI LPSKKRQVTI 180
  181 LKDVSGIVKP CRMTLLLGPP GSGKTTLLLA LAGKLDSALK VTGKVTYNGH ELHEFVPQRT 240
  241 AAYISQHDLH IGEMTVRETL EFSARCQGVG SRYEMLAELS RREKAANIKP DADIDMFMKA 300
  301 ASTEGQEAKV VTDYILKILG LDICADTMVG DQMIRGISGG QKKRVTTGEM IVGPSKALFM 360
  361 DEISTGLDSS TTYSIVNSLK QSVRIMKGTA LISLLQPAPE TYNLFDDIIL LSDGYIVYEG 420
  421 PREEVLEFFE SMGFKCPERK GAADFLQEVT SKKDQQQYWI RRDEPYRFIT SKEFAEAYQS 480
  481 FHVGRKVSDE LKTTFDKSKS HPAALTTQKY GIGKRQLLKV CTERELLLMQ RNSFVYLFKF 540
  541 FQLLIIALMT MTIFFRTKMP RDSAEDGGIY SGALFFVVIM IMFNGLSELP MTLYKLPVFY 600
  601 KQRDFLFYPS WAYAIPSWIL KIPVTFAEVG MWVFLTYYVM GFDPNVGRFF KQFLLLLLVN 660
  661 QMASALFRFI AAVGRTMGVA STFGAFALLL QFALGGFILA RNDVKDWWIW GYWTSPLMYS 720
  721 VNAILVNEFD GQKWKHIVAG GTEPLGAAVV RARGFFPDAY WYWIGVGALA GFIVMFNIAY 780
  781 SVALAYLNPF DKPQATISDE SENNESESSP QITSTQEGDS ASENKKKGMV LPFDPHSITF 840
  841 DEVVYSVDMP PEMRESGTSD NRLVLLKSVS GAFRPGVLTA LMGVSGAGKT TLMDVLAGRK 900
  901 TGGYIDGSIK ISGYPKKQDT FARISGYCEQ NDIHSPYVTV FESLVYSAWL RLPQDVNEEK 960
  961 RMMFVEEVMD LVELTPLRSA LVGLPGVNGL STEQRKRLTI AVELVANPSI IFMDEPTSGL1020
 1021 DARAAAIVMR AVRNTVDTGR TVVCTIHQPS IDIFEAFDEL FLMKRGGQEI YVGPLGRQSC1080
 1081 HLIKYFESIP GVSKIVEGYN PATWMLEVTA SSQEMALGVD FTDLYKKSDL YRRNKALIDE1140
 1141 LSVPRPGTSD LHFDSEFSQP FWTQCMACLW KQHWSYWRNP AYTAVRLIFT TFIALIFGTM1200
 1201 FWDIGTKVSR NQDLVNAMGS MYAAVLFLGV QNSSSVQPVV SVERTVFYRE KAAGMYSAIP1260
 1261 YAFAQVLIEI PYIFVQATVY GLIVYSMIGF EWTVAKFFWD FFFMFFTFLY FTFFGMMTVA1320
 1321 VTPNQNVASI VAGFFYTVWN LFSGFIVPRP RIPIWWRWYY WGCPIAWTLY GLVASQFGDL1380
 1381 QDPLTDQNQT VEQFLRSNFG FKHDFLGVVA AVIVAFAVVF AFTFALGIKA FNFQRR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle