YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2230761, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDAARTPL LPTEKIDTMA QDFNLNSRTS SSRKRRLRRS RSAPRGDCMY NDDVKIDEPP  60
   61 PHPSKIPMFS DLNPNLRRVI MFLALYLTIG TLCFYLVRDQ ISGHKTSGVV DALYFCIVTM 120
  121 TTVGYGDLVP NSSASRLLAC AFVFSGMVLV GHLLSRAADY LVEKQEALLV RAFHLRQSFG 180
  181 PTDILKELHT NKLRYKCYAT CLVLVVLFIV GTIFLVMVEK MPVISAFYCV CSTVTTLGYG 240
  241 DKSFNSEAGR LFAVFWILTS TICLAQFFLY VAELNTENKQ RALVKWVLTR RITNNDLEAA 300
  301 DLDEDGVVGA AEFIVYKLKE MGKIDEKDIS GIMDEFEQLD YDESGTLTTS DIVLAQTTSQ 360
  361 IQR

Type	Start	End	Confidence
Non-Cytoplasmic	1	77	0.59
Transmembrane Helix	78	97	0.92
Cytoplasmic	98	106	0.55
Transmembrane Helix	107	126	0.63
Non-Cytoplasmic	127	133	0.75
Transmembrane Helix	134	154	0.91
Cytoplasmic	155	196	0.91
Transmembrane Helix	197	217	0.94
Non-Cytoplasmic	218	223	0.77
Transmembrane Helix	224	240	0.63
Cytoplasmic	241	250	0.52
Transmembrane Helix	251	272	0.92
Non-Cytoplasmic	273	363	0.62