YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21064685
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHPMFTFGM VAVYLSWVLV IGPLFMRDRK PFQLRRTLVV YNAFQVALSG YMFYEHLMAG  60
   61 WLNYYNLKCQ PVDYSDSPSS KRMLNLCYLY YLSKLTEFAD TMFFVLRKKS SQITWLHVYH 120
  121 HSVTPLETWV LVKFLAGGNA TFPNLLNNFV HVCMYFYYMM AAMGPEYAKF LWWKKYMTEL 180
  181 QIAQFVLCIF HTLRALFSNQ CQFSKFISAL LLLNASIFFC LFMNFYMQSY RKTKAAQQLQ 240
  241 QQQQQQKQQQ QLDATPCKAD SNNNTAMLAQ KLKAN

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.92
Transmembrane Helix	6	26	0.94
Cytoplasmic	27	37	0.87
Transmembrane Helix	38	57	0.79
Non-Cytoplasmic	58	139	0.78
Transmembrane Helix	140	161	0.69
Cytoplasmic	162	179	0.62
Transmembrane Helix	180	198	0.85
Non-Cytoplasmic	199	205	0.81
Transmembrane Helix	206	226	0.95
Cytoplasmic	227	275	0.93