YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21064527
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTKDVQVFV HAKVFFSIGG RYFSGEPVQF SYMPDTIMDH ARDVTIKLHH RVGKYLKINL  60
   61 YFAVKWIMLS EISFISVPAM GNFTDEQEQR SNSPSQAQDV HDETNGSEYQ ANRNKPNGVG 120
  121 GSAGGLGEGV AAAGGDIVGN NKYNNGPQLI APRPIDQEPN DANFIGVVIV VLTTIIILLV 180
  181 AIILFIVSRT KRARGSNVLD AFQYSFNPNT LGGNVDKHRP NGNSIKANVD DNDSIGKNSL 240
  241 YHEPFNVNMY TCGVNGYAAV NDLQCNMTPD YTDVPEGGYA VPHMQDYMPS SKMGGGAPGG 300
  301 GGYVNVRRTP PPPLSSIFPR PPTVPPPPME KYYATTAIFK PLKGPGSERS GCSSNTNTVS 360
  361 SGGGKSSHSH SSHCSTGGPD HSGIYDDGIG TMNSKATAPM INPYSSGNSS SAAAAAAAEF 420
  421 QRARTYNFRS YPDNL

Type	Start	End	Confidence
Cytoplasmic	1	60	0.69
Transmembrane Helix	61	77	0.46
Non-Cytoplasmic	78	163	0.77
Transmembrane Helix	164	187	0.93
Cytoplasmic	188	435	0.85