YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21064391
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQLFFGIDK PIDVAIFSQP PSAEFVNLLC ALLVWSVRYP AVFWNTSKAF ACVFSLQMVV  60
   61 AALDIILGYV GISNLYKLQI YAEAMPVHQP GLILNAVVTL ALYLLSTALV LASSMVMYLY 120
  121 GHGRLATRMR DRSIITLKTH QTWIYFAHCA SLCFVLALAV VKAPLLNDLS ATYKNNLHCP 180
  181 TFLAALVGVT HLLLWIVIWL CLTIKRRWHF KLPPLDSTYG GLLGKSSAQP LLMSSGQRTG 240
  241 SNSSSSGCNS TSTTVNGGDS KPDMMSTATS TELGMGIGMG IGGGINGGMG GTGMGLAAQE 300
  301 DIYWPKLTPS SPKLKVTFNE VTSTSDDVLL IGDQEQTDGK R

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.68
Transmembrane Helix	21	39	0.71
Cytoplasmic	40	49	0.78
Transmembrane Helix	50	72	0.88
Non-Cytoplasmic	73	98	0.88
Transmembrane Helix	99	121	0.95
Cytoplasmic	122	141	0.94
Transmembrane Helix	142	163	0.93
Non-Cytoplasmic	164	180	0.90
Transmembrane Helix	181	202	0.94
Cytoplasmic	203	273	0.94
Transmembrane Helix	274	297	0.67
Non-Cytoplasmic	298	341	0.73