YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21064293
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.52
Topology Confidence:	0.15
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	29	0.52
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	174	0.55
Transmembrane Helix	175	189	0.15
Cytoplasmic	190	208	0.55
Transmembrane Helix	209	231	0.90
Non-Cytoplasmic	232	261	0.59
Transmembrane Helix	262	281	0.70
Cytoplasmic	282	996	0.70
Transmembrane Helix	997	1017	0.83
Non-Cytoplasmic	1018	1027	0.75
Transmembrane Helix	1028	1047	0.85
Cytoplasmic	1048	1075	0.90
Transmembrane Helix	1076	1097	0.90
Non-Cytoplasmic	1098	1110	0.76
Transmembrane Helix	1111	1131	0.93
Cytoplasmic	1132	1141	0.77
Transmembrane Helix	1142	1162	0.96
Non-Cytoplasmic	1163	1182	0.84
Transmembrane Helix	1183	1204	0.89
Cytoplasmic	1205	1237	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIISLLIDS PVSPMTSLLP LVFVIAVTAA KQGYEDILRY RTDNVVNSSP VTVIRDGKEA  60
   61 IIKSQDVIPG ELIVVERDCD VPCDLVLLRS TDPHGKFFIT TANLDGESNL KTLMVPRDLP 120
  121 TVDLPEMHKL GIIECESPTT DLYSFNGKIE LKGGEGRVLP LSTENVLLRG SRVKNTECVI 180
  181 GCAVYTGMIS KLQLNSRLTR NKNASSETYI NRFLIVILVA LIAIVTLLYF LKRYNELFVI 240
  241 PKLTYLGDAT DSYSVKQFLQ DYLSFLILFN YLIPISLYVT IELQRVIGSW FMEWDLELYE 300
  301 NETDQPCVVN TSNLNEELGQ INILFSDKTG TLTKNEMNFQ QCSINGNKFL FKKTRLEDEE 360
  361 TKALLDINKF SANQRVFFQA LSICHTVQVA SGSLEQADAG TAKREPVTAI KSGPPEMYSI 420
  421 SDITEESHNA SQQSELNVGH TIDNSVSAHP NGVNSTIISS DVNPLLVSDD GYGVERRKRP 480
  481 VVIKRSPNFA RSNRMNNGAA SDLNINQTDP NTVTNGVEPT TNFRPISLQF RRSTSEKDLQ 540
  541 QSWEAPSGQA PGHRRAHSYG APNAYLTNPV TASTPPAGVL FRSPSTTSRE SYAAPTFTRQ 600
  601 PTILVRAESQ RRKNEIRDFI FTLDYQASSP DEKALVEACA NLGMVYTGDD DETLRVRIVP 660
  661 PHMDYKRPFA KPREETFQRL HVLEFTSDRK RMSVIVRDTD GKKWIYTKGA ESYVFPLCAN 720
  721 SSAELVTKTD AHISDFARLG LRTLAIARRL ISEEEYQDFL VELAQANSSL ENRKQLSEEC 780
  781 YAKIESNLDL LGATAVEDAL QDDVADTLVS LQAAGIKIWV LTGDKVETAL NIALSCGHIP 840
  841 PDAKKYFIME CKNREEMLLH LNALDREIIF GIGQECALLI DGKSLGVALA EASSEFRDVA 900
  901 VKCTAVLCCR LSPLQKSEVV SLIKSSNENY NTASIGDGAN DVSMIQEAHV GIGIMGREGR 960
  961 QAARCADFAF AKFCMLKRLL LVHGHYHSVR LSLLVLYFFY KNIVFMGIMF LFQFHTLFSS1020
 1021 SSVYDSLFLT LYNVIYTSLP ILFIAISEKP YTEEKLMRTP QLYKKNTDNK QLHWPYFLMW1080
 1081 VLFAIYHSVI IFYFAFCFFY YNNVLLNYGQ TVAFSCFGTL LMWTVVVVVN LKLWLESMYL1140
 1141 SFWYIFTIII SILGFVVTTV IYNVINLDYD TDIYWAYNNL LASLPVWLWI IVTCVACLVP1200
 1201 DYTIRMLQRA LNIKSFSIFP GKQRKLKMRE KFESTYL