YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21064241
Protein type:	Globular with Signal Peptide
Type Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRFLRSAMI VFSWFVVPYS RYTNIKVIRR KLPPIRSHLL EIPAVDLAKL IRTRKIKSEE  60
   61 VVEAYIERCR QVNPLINAIV QDRFEEALEE AREIDNVIAM GINSVESMEE LTPLLGIPVT 120
  121 VKESIAVKGM TNQAGRVFKT PQIAKSDAPV VEQIKRSGGI ILLVSNTPEL CLLWETYNNV 180
  181 TGQTKNPYDL KRTPGGSSGG EAALLASGAS LLGLTSDIGG SSRLPAMFSG IWGHKPTPYA 240
  241 VSFKGHHPTS DFPKWGDFFT IAPMTRYAKD LPLLLKCMSD PTGPKLTLDR PISVNGIRFF 300
  301 FMDNDGPSGM MRPLSRDLHA AINRVATDFN AKRVNIRKMK WSLDISLSAM LTMKNIETIY 360
  361 HKTEEGEQPK TVCKETVKYF FGCSDSILPS VIFGHLQNFM KIIPNSRHKH LASIIEALKT 420
  421 EFKEMLGNDG VFLYPTFPNT AHQHYQIYHK LLEPMYMAIF NTLGCRLPTA

Type	Start	End	Confidence
Signal Peptide	1	20	0.67
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	470	0.98