YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21064195
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTYLLTAIP SLDSDKTISI VEGVPNLDLQ TVGSNRKSQI LKPNLLSDEM REEFRKMPVG  60
   61 GFKFQFPWSR RERNLKNEKV ERDLGIFCVA FKDKPVEWNY LHQPDYIFKY SVALGWGIGC 120
  121 CLIYIQSVNN SDIFYTGVVI NIIAFFVLTF LLFICWYKKV CWWHSGQNEH RSYGKLSCAI 180
  181 FHLFEKIQHS FVLRLTVYMM IILCYYMVIS LILMSCEKDQ YELDIIESKL YNYDMDPFTC 240
  241 FHPWAYTNMM ALILGMSYTF ARIPFALKTF IGCAEAVVFV LVVCFQYAFI FEHSVTTSPY 300
  301 LKAEIAHSCR VCMMLITMYA KERQSEFNTK MNYKLNLDLQ NKQKSADVTN QSIIILLNNI 360
  361 LPSHVVLFRS RGISQLYSQT RTLL

Type	Start	End	Confidence
Cytoplasmic	1	105	0.99
Transmembrane Helix	106	126	0.93
Non-Cytoplasmic	127	132	0.83
Transmembrane Helix	133	157	0.89
Cytoplasmic	158	190	0.98
Transmembrane Helix	191	213	0.89
Non-Cytoplasmic	214	240	0.94
Transmembrane Helix	241	261	0.91
Cytoplasmic	262	269	0.80
Transmembrane Helix	270	290	0.95
Non-Cytoplasmic	291	384	0.77