YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21064125
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANNQPPTTN ATRKDKRIER DENRGQWKSK SEFILSLLGY AIGIGNVWRF PYLCYRSGGA  60
   61 AFLIPYLLMV ILAGIPLFYM EILIGQFSST GCTGMFRMTP LLKGTGIAQV VVNAYCVCYY 120
  121 SVIISYPIRM IFYCFFKKVP WEDCSNSWNT DDCVTASDMG KQNSSDVFKT SADEFFHLEV 180
  181 LRISTDISDL GGMVWEQLTA LIITWIIIYF CLMRGIKSVG KVVYFTVPFP YLLLFILLIR 240
  241 GATLPGAWKG IKFYLYPEWH RLLDLKVWAD AAVQMFFGIG PGWGGIVNMA SFSSFRNNAK 300
  301 CDSVLIVSIN VFTSLLAGFV SSPCWVFSLK NRAYPWNRWP LEELDWPSSR IRRPLPCCLS 360
  361 RSSGRSCFSL CSFCWASTVC LYNWRPSCHR YWMSGIG

Type	Start	End	Confidence
Cytoplasmic	1	32	0.93
Transmembrane Helix	33	52	0.89
Non-Cytoplasmic	53	60	0.74
Transmembrane Helix	61	83	0.87
Cytoplasmic	84	100	0.82
Transmembrane Helix	101	123	0.84
Non-Cytoplasmic	124	192	0.87
Transmembrane Helix	193	213	0.89
Cytoplasmic	214	221	0.76
Transmembrane Helix	222	244	0.86
Non-Cytoplasmic	245	270	0.79
Transmembrane Helix	271	292	0.84
Cytoplasmic	293	303	0.75
Transmembrane Helix	304	327	0.85
Non-Cytoplasmic	328	365	0.80
Transmembrane Helix	366	384	0.62
Cytoplasmic	385	397	0.58