YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13518113
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPALGTLSGG AAGVAGLLRL RRATPSPAVA TPFPAAAAAR CAAAAAAVVP DGGQLVWGRQ  60
   61 LRPALLLPAA GGLLQPPTSP SSSQAGRRQA LRPPAAATSG EAKPAGFLEK YPALITGFFF 120
  121 FMWYFLNVIF NILNKKIYNY FPYPYFVSVI HLLVGVVYCL LSWAVGLPKR APINATLLKL 180
  181 LFPVALCHAL GHATSNVSFA TVAVSFAHTI KALEPLFNAA ATQFVLGQTV PLSLWLSLAP 240
  241 VVLGVSMASL TELSFSWKGF INAMIPNISF TYRSIYSKKA MTDMDSTNVY AYISIIALVV 300
  301 CIPPALIIEG PQLVQYGLND AIAKVGMTKF VSDLFLVGLF YHLYNQIATN TLERVAPLTH 360
  361 AVGNVLKRVF VIGFSIIIFG NKITTQTGIG TCIAIAGVAL YSYIKAKIEE EKRAKAA

Type	Start	End	Confidence
Cytoplasmic	1	110	0.61
Transmembrane Helix	111	133	0.85
Non-Cytoplasmic	134	144	0.64
Transmembrane Helix	145	167	0.89
Cytoplasmic	168	176	0.66
Transmembrane Helix	177	207	0.66
Non-Cytoplasmic	208	231	0.60
Transmembrane Helix	232	255	0.74
Cytoplasmic	256	287	0.72
Transmembrane Helix	288	308	0.94
Non-Cytoplasmic	309	324	0.84
Transmembrane Helix	325	344	0.68
Cytoplasmic	345	363	0.52
Transmembrane Helix	364	379	0.66
Non-Cytoplasmic	380	384	0.69
Transmembrane Helix	385	404	0.91
Cytoplasmic	405	417	0.92