YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7268698, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADISGNGYG NAREEVVMVN LKDEVEHQQE MEDIHNPRPL KKQDSLLSVS VPFLQKLIAE  60
   61 FLGTYFLVFT GCASVVVNMQ NDNVVTLPGI AIVWGLTIMV LIYSLGHISG AHINPAVTIA 120
  121 FASCGRFPLK QVPAYVISQV IGSTLAAATL RLLFGLDHDV CSGKHDVFIG SSPVGSDLQA 180
  181 FTMEFIVTFY LMFIISGVAT DNRAKLNIGT KCCNIQIGEL AGLAIGSTVL LNVLIAAPVS 240
  241 SASMNPGRSL GPALVYGCYK GIWIYLVAPT LGAIAGAWVY NTVRYTDKPL REITKSGSFL 300
  301 KTVRIGST

Type	Start	End	Confidence
Cytoplasmic	1	56	0.90
Transmembrane Helix	57	77	0.86
Non-Cytoplasmic	78	89	0.62
Transmembrane Helix	90	111	0.85
Cytoplasmic	112	131	0.77
Transmembrane Helix	132	153	0.83
Non-Cytoplasmic	154	179	0.91
Transmembrane Helix	180	200	0.92
Cytoplasmic	201	219	0.85
Transmembrane Helix	220	240	0.92
Non-Cytoplasmic	241	260	0.92
Transmembrane Helix	261	282	0.93
Cytoplasmic	283	308	0.97