YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42572117, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.61
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERCRSGHHR IISYYLSSSL ILFWCIFVLV LLSTTSTTNA LVKIPKNTTV PAVIVFGDSI  60
   61 VDAGNNDDMI TEARCDYAPY GIDFDGGVAT GRFSNGKVPG DIVAEELGIK PNIPAYRNPN 120
  121 LKPEELLTGV TFASGGAGYV PLTTKIAGGI PLPQQLIYFE EYIEKLKQMV GEKRTKFIIK 180
  181 NSLFVVICGS NDIANDFFTL PPVRLHYTVA SFTALMADNA RSFAQTLYGY GARRILVFGA 240
  241 PPIGCVPSQR TVAGGPTRDC VARFNDAAKL FNTKLSANID VLSRTLQDPT IIYIDIYSPL 300
  301 LDLILNPHQY GFKVANKGCC GTGLIEVTAL CNNYTASVCP IRSDYVFWDS FHPTEKAYRI 360
  361 IVAKLLDRYL NRFF

Type	Start	End	Confidence
Cytoplasmic	1	10	0.60
Transmembrane Helix	11	32	0.56
Non-Cytoplasmic	33	374	0.98