YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28827160
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLMPSIYGVI CFVGIIGNCI VIYTIVKKTK FRAQQTVPDI FIFSLCIADL LFLLGMPLLI  60
   61 DQLVGNGFWC FGGTMCTVIT ELDSNNRIMS TYILTVMTLD RYLATVHPIR FNHIRTPRVA 120
  121 VAVVALVWIL SLLSITPVWM YAGLMPLRDG SMGCALLLPN PATDTYWFTL YQFVLAFALP 180
  181 LVIICVVFFK ILQNMAATVA PLPQHSLRVR TRKVTRMAVA ICLAFFICWA PHYILQLAHL 240
  241 SVQRPSYAFL FAYNVAISMG YANSCINPLL YIMLSETFKR QFIVAIRPAH KDFRADPADG 300
  301 SVSLRLAPDV AQQSQSSREL LPVTVAVH

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.90
Transmembrane Helix	6	26	0.96
Cytoplasmic	27	36	0.91
Transmembrane Helix	37	60	0.85
Non-Cytoplasmic	61	64	0.70
Transmembrane Helix	65	82	0.53
Cytoplasmic	83	118	0.67
Transmembrane Helix	119	142	0.90
Non-Cytoplasmic	143	169	0.93
Transmembrane Helix	170	192	0.91
Cytoplasmic	193	213	0.94
Transmembrane Helix	214	235	0.93
Non-Cytoplasmic	236	249	0.89
Transmembrane Helix	250	272	0.87
Cytoplasmic	273	328	0.95