YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28827158
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AILPSIFGII CFLGISGNSI VVYTIIKKTK CQAKQTVPDI FIFNLSIVDL LFLLGMPFLI  60
   61 HQLLGNGSWC FGATMCKVIS ALDSNSQTVS TYILTVMTLD RYVATVHPFR FNHVRTTCVA 120
  121 SAVVAAVWAL SLISITPVLM YTGLMPLHSG QVGCALLLPN PSTNICWFTI YQFVLAFALP 180
  181 LTIICVVFFK ILKHMSTTVA PLPRRNQQVR TKSVTRMAVA ICLAFFICWA PYYILQIVHL 240
  241 GIQKPSASFY YVYHVAISMG YANSCINPFL YIILSKTFKR QFIVAIQPAH NRFRVNPSST 300
  301 EATVSLRLAT DCQRHVPADN SE

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.88
Transmembrane Helix	6	26	0.95
Cytoplasmic	27	39	0.90
Transmembrane Helix	40	61	0.90
Non-Cytoplasmic	62	87	0.75
Transmembrane Helix	88	104	0.67
Cytoplasmic	105	116	0.68
Transmembrane Helix	117	140	0.87
Non-Cytoplasmic	141	168	0.84
Transmembrane Helix	169	192	0.91
Cytoplasmic	193	212	0.97
Transmembrane Helix	213	235	0.93
Non-Cytoplasmic	236	250	0.93
Transmembrane Helix	251	273	0.91
Cytoplasmic	274	322	0.97