YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7267598, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFGRNNRVR FRDWISEGTE YGYGRNKARP SLNTVLKNVR RGLKKPLSFG SHNKKRDSNS  60
   61 STTTQKNIIN PQGSFLQNWN KIFLFASVIA LAIDPLFFYI PIVDGERHCL NLHRNLEIAA 120
  121 SVLRTFIDAF YIIHIVFQFR TAYISPSSRV FGRGELVDDP KAIAIKYLSS YFIIDLLSIL 180
  181 PLPQLVVLAV IPNVNKPVSL ITKDYLITVI FTQYIPRILR IYPLYTEVTR TSGIVTETAW 240
  241 AGAAWNLSLY MLASHVFGAL WYLISVERED RCWREACEKI PEVCNFRFLY CDGNSSVRND 300
  301 FLTTSCPFIN PDDITNSTVF NFGIFTDALK SGIVESDDFW KKFFYCFCAL GQNLNTSKFV 360
  361 GEIIFAVSIC ISGLVLFALL IGNMQKYLES TTVREEEMRV RKRDAEQWMS HRMLPDDLRK 420
  421 RIRRYEQYKW QETRGVEEEN LLRNLPKDLR RDIKRHFCLD LLKKVPLFEI MDEQLLDAVC 480
  481 DKLKPVLYTE NSYAIREGDP VEEMLFVMRG KLMSATTNGG RTGFFNAVYL KPSDFCGEDL 540
  541 LTWALDPQSS SHFPISTRTV QALTEVEAFA LAADDLKLVA SQFRRLHSKQ LQHTFRFYSV 600
  601 QWRTWGASFI QAAWRRHCRR KLARSLTEEE DRFRNAITKR ERNAASSSSL VATLYASRFA 660
  661 SNALRNLRTN NLPLLPPKPS EPDFSLRNP

Type	Start	End	Confidence
Cytoplasmic	1	81	0.82
Transmembrane Helix	82	103	0.86
Non-Cytoplasmic	104	121	0.72
Transmembrane Helix	122	144	0.69
Cytoplasmic	145	170	0.73
Transmembrane Helix	171	191	0.80
Non-Cytoplasmic	192	242	0.89
Transmembrane Helix	243	264	0.91
Cytoplasmic	265	362	0.95
Transmembrane Helix	363	382	0.95
Non-Cytoplasmic	383	689	0.95