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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PROM2_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRTLDLMVP LLGLSLGLAL SLPRAVAADC GSLGRVEHLA FAPVPGTEPT APRVRAPWPL  60
   61 DSLYGTVRRF LSVVQLNPFP AELIKTLLND PSSVKTDEVV RYEAGYVVCA VIAGLYLLLV 120
  121 PITGLCFCCC RCRRRCGGRV KTEHKAMACE RGTLMTFLLL TTLMLLIGMV CAFATNQFTH 180
  181 SQTGPSVEAV PETLLSLRGL VSDVPKKLQA VADQFSSPQK QVSKDLDGVG ENLGNIIHNQ 240
  241 LKSTVYPVLA SVHGLGQALQ VSIDHLQSVN ATSVELREGQ QHLGPPVQAH RERLLALLQE 300
  301 SWCHENCKGA LSQASALQLG ADFSQMPPVD DVLHRLQGVP EANFSSMVQE ENATFNNLPI 360
  361 LVHMQMVSVV KDLKKALAEQ PEGVRMLAQA FPGSEATSRW SQALEGLEQR SRPYLQDVQR 420
  421 YETYRWILGC VLCSAILLVV ICNLLGLSLG IWGLFAREDP SHSETKGEAG ARFLMAGVAF 480
  481 SFLFAAPLIL LVFATFLVGG NVQTLVCRSW ESGELYEFVD TPGNLPPSMN LSYLLGLRKN 540
  541 ISVFQAYRQC KAGTALWKVL QLNDSYDLDK HLDIKQYTHE LQQELQSFKV DLKDLDLLNP 600
  601 AARQNLEALQ SSGLEKIHYR DFLVQIQKPV VKTDMGQLAK ELEGLAQAQN ESLRRQQLQE 660
  661 EARELRSLYQ EKVVPQENLV AKLNPSIRVL ESSAPKLQVN TSDLLDIVAR LKGELPAQLN 720
  721 HILRNATECF LTREMGYFSQ YVTWVREEVT QHIATCQPFS KALDDGHMIL CDMMANPWNA 780
  781 FWFCLGWCTF FLIPSIIFAV KTSKYFRPIR KRLSSTSSEE TQLFHIPRVT SLKL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle