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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PDR4_ORYSA
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDREVHRMAS LRREGSMWRS GGDVFSRSSS RFQDEDDDEE ALRWAALERL PTYDRVRRGI  60
   61 LAVSSEDGGA GGEKVEVDVG RLGARESRAL IERLVRAADD DHERFLLKLR ERMDRVGIDY 120
  121 PTIEVRFENL EVEADVHVGN RGLPTLLNSV TNTVEAIGNA LHILPNKKQP MTVLHDVSGI 180
  181 IKPRRMTLLL GPPGSGKTTL LLALAGKLDK DLKVSGKVTY NGHGMHEFVP ERTAAYISQH 240
  241 DLHIGEMTVR ETLAFSARCQ GVGTRYEMLT ELARREKAAN IKPDHDIDIY MKASAMGGQE 300
  301 SSVVTDYILK ILGLDICADT VVGNEMLRGI SGGQRKRVTT GEMLVGPARA LFMDEISTGL 360
  361 DSSTTYQIVN SLRQTIHILG GTAVISLLQP APETYNLFDD IILLSDGQVV YQGPREHVLE 420
  421 FFEFMGFRCP ARKGVADFLQ EVTSRKDQGQ YWCRRDRPYR FVPVKQFADA FRSFHVGRSI 480
  481 QNELSEPFDR TRSHPAALAT SKYGVSRKEL LKATIDRELL LMKRNAFMYI FKAVNLTLMA 540
  541 LIVMTTFFRT SMRHDRDYGM IYLGALYFAL DTVMFNGFAE LAMTVMKLPV FFKQRDLLFF 600
  601 PAWAYTIPSW ILQIPITFLE VGVYVFITYY VIGFDPSVSR FFKQYLLLLA LNQMSSALFR 660
  661 FIAGIGRDMV VSHTFGPLSL LAFAALGGFI LARPDVKKWW IWGYWISPLS YAQNAISTNE 720
  721 FLGHSWSQIL PGENVTLGVS VLKSRGIFTE AKWYWIGLGA LLGYTLLFNL LYTVALSVLS 780
  781 PFTDSHASMS EDALKEKHAN LTGEVVEGQK DTKSRKQELE LSHIADQNSG INSADSSASR 840
  841 KGMVLPFAPL SISFNDVRYS VDMPEAMKAQ GITEDRLLLL KGVSGSFRPG VLTALMGVSG 900
  901 AGKTTLMDVL AGRKTGGYIE GDIRISGYPK KQETFARISG YCEQNDIHSP HVTVYESLVF 960
  961 SAWLRLPSEV DSEARKMFIE EVMDLVELTS LRGALVGLPG VSGLSTEQRK RLTIAVELVA1020
 1021 NPSIIFMDEP TSGLDARAAA IVMRTVRNTV NTGRTVVCTI HQPSIDIFEA FDELFLMKRG1080
 1081 GEEIYVGPVG QNSSKLIEYF EGIDGVSRIK DGYNPATWML EVTSSAQEEM LGVDFSEIYR1140
 1141 QSELYQRNKE LIEELSTPPP GSTDLNFPTQ YSRSFITQCL ACLWKQNWSY WRNPSYTAVR1200
 1201 LLFTIVIALM FGTMFWNLGT RTKKQQDLFN AMGSMYAAVL YIGVQNSGSV QPVVVVERTV1260
 1261 FYRERAAGMY SAFPYAFGQV AIELPYIMVQ TLIYGVLVYS MIGFEWTVAK FLWYLFFMYF1320
 1321 TLLYFTFYGM MAVGLTPNES IAAIISSAFY NVWNLFSGYL IPRPKIPVWW RWYCWICPVA1380
 1381 WTLYGLVASQ FGDIQHVLEG DTRTVAQFVT DYFGFHHNFL WVVAVVHVVF AVTFAFLFSF1440
 1441 AIMKFNFQRR 

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