YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PDR3_ORYSA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	533	0.97
Transmembrane Helix	534	554	0.94
Cytoplasmic	555	565	0.80
Transmembrane Helix	566	586	0.90
Non-Cytoplasmic	587	616	0.88
Transmembrane Helix	617	639	0.91
Cytoplasmic	640	647	0.85
Transmembrane Helix	648	670	0.86
Non-Cytoplasmic	671	676	0.80
Transmembrane Helix	677	699	0.93
Cytoplasmic	700	761	0.60
Transmembrane Helix	762	787	0.88
Non-Cytoplasmic	788	1205	0.59
Transmembrane Helix	1206	1227	0.90
Cytoplasmic	1228	1235	0.55
Transmembrane Helix	1236	1263	0.72
Non-Cytoplasmic	1264	1289	0.58
Transmembrane Helix	1290	1311	0.75
Cytoplasmic	1312	1318	0.83
Transmembrane Helix	1319	1340	0.92
Non-Cytoplasmic	1341	1346	0.83
Transmembrane Helix	1347	1369	0.90
Cytoplasmic	1370	1376	0.91
Transmembrane Helix	1377	1396	0.93
Non-Cytoplasmic	1397	1426	0.91
Transmembrane Helix	1427	1449	0.93
Cytoplasmic	1450	1457	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAAGEIQKV ASMRLGGSMR GDSGSMWRRG DDVFSRSSRE EDDEEALRWA ALEKLPTYDR  60
   61 VRRAILPLGG DDGAGDGGGK GVVDVHGLGP RERRALLERL VRVADEDNEK FLLKLKDRVD 120
  121 RVGIDMPTIE VRFEHLEAEA EVRVGNSGLP TVLNSITNTL EEAGNALGIL PNRKQTMPVL 180
  181 HDVSGIIKPR RMTLLLGPPG SGKTTLLLAL AGRLGKDLKA SGKVTYNGHG MEEFVPERTA 240
  241 AYISQHDLHI GEMTVRETLA FSARCQGVGS RFDMLTELSR REKAANIKPD ADIDAFMKAA 300
  301 AMGGQEANVN TDYILKILGL EICADTMVGD EMLRGISGGQ RKRVTTGEML VGPARALFMD 360
  361 EISTGLDSST TFQIVNSLRQ TVHILGGTAV ISLLQPAPET YNLFDDIILL SDGQIVYQGP 420
  421 REDVLEFFES MGFKCPDRKG VADFLQEVTS KKDQRQYWAR HDKPYRFVTV KEFVSAFQSF 480
  481 HTGRAIANEL AVPFDKSKSH PAALATTRYG APGKELLKAN IDREILLMKR NSFVYMFRTF 540
  541 QLMVVSLIAM TLFFRTKMKR DSVTSGGIYM GALFFGVLMI MFNGFSELAL TVFKLPVFFK 600
  601 QRDLLFYPAW SYTIPSWILK IPITFIEVGG YVFLTYYVIG FDSNVGSFFK QYLLMLAINQ 660
  661 MAGSLFRFIG GAARNMIVAN VFASFMLLIF MVLGGFILAR EQVKKWWIWG YWISPMMYAQ 720
  721 NAISVNELMG HSWNKIVNSS ASNETLGVQV LKSRGVFPEA RWYWIGFGAM IGFTILFNAL 780
  781 FTLALTYLRP YGNSRQSVSE EELKEKRANL NGEIVGDVHL SSGSTRRPMG NGTENDSTIV 840
  841 DDDTEVTQRG MVLPFTPLSL SFDNVRYSVD MPQEMKAQGV ADDRLELLKG VSGSFRPGVL 900
  901 TALMGVSGAG KTTLMDVLAG RKTGGYIEGS INISGYPKKQ ETFARVSGYC EQNDIHSPQV 960
  961 TVYESLLFSA WLRLPEDVDS NTRKMFIEEV MELVELKSLR DALVGLPGVN GLSTEQRKRL1020
 1021 TIAVELVANP SIIFMDEPTS GLDARAAAIV MRTVRNTVNT GRTVVCTIHQ PSIDIFEAFD1080
 1081 ELFLMKRGGE EIYAGPLGHH SSELIKYFES IPGVSKIKDG YNPATWMLEV TTIGQEQALG1140
 1141 VDFSDIYKKS ELYQRNKALI KDLSQPAPDS SDLYFPTQYS QSSLTQCMAC LWKQNLSYWR1200
 1201 NPPYNAVRFF FTTVIALLFG TIFWDLGGKV TKSQDLFNAM GSMYAAVLFI GVMNCTSVQP1260
 1261 VVAVERTVFY RERAAGMYSA FPYAFGQVVI EIPYTLVQAT VYGIIVYAMI GFEWTAAKFF1320
 1321 WYLFFMVFTL LYFTFYGMMA VGLTPNYHIA SIVSSAFYAI WNLFSGFVIP RPRVPIWWRW1380
 1381 YCWACPVAWT LYGLVVSQFG DIETPMEDGT PVKVFVENYF GFKHSWLGWV ATVVAAFAFL1440
 1441 FASLFGFAIM KFNFQKR