YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HAK7_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.75
Transmembrane Helix	53	68	0.65
Non-Cytoplasmic	69	89	0.64
Transmembrane Helix	90	112	0.80
Cytoplasmic	113	178	0.84
Transmembrane Helix	179	202	0.89
Non-Cytoplasmic	203	218	0.88
Transmembrane Helix	219	238	0.93
Cytoplasmic	239	247	0.79
Transmembrane Helix	248	270	0.92
Non-Cytoplasmic	271	295	0.92
Transmembrane Helix	296	315	0.91
Cytoplasmic	316	324	0.68
Transmembrane Helix	325	345	0.89
Non-Cytoplasmic	346	367	0.87
Transmembrane Helix	368	393	0.83
Cytoplasmic	394	418	0.87
Transmembrane Helix	419	439	0.91
Non-Cytoplasmic	440	447	0.78
Transmembrane Helix	448	470	0.92
Cytoplasmic	471	476	0.80
Transmembrane Helix	477	497	0.95
Non-Cytoplasmic	498	503	0.86
Transmembrane Helix	504	524	0.93
Cytoplasmic	525	541	0.92
Transmembrane Helix	542	563	0.87
Non-Cytoplasmic	564	811	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSYQYLLSL LFYILDCTDR FSVIVTIHNH RVGVLMIVLL QDQWKSYCRT ISLLAFQSFG  60
   61 VVYGDLSTSP LYVYKSAFSG RLNNYRDETT IFGLFSLIFW TLTLLPLLKY VIIVLNADDN 120
  121 GEGGTFALYS LLCRHAKFSL LPNQQSADEE LSTYYQPGVG GIISSPLKRF LEKHRKLRTC 180
  181 LLLFVLFGAC MVIGDGVFTP AISVLSAISG LKDPGPGGIP DGWVVFIACI VLVGLFALQH 240
  241 RGTHRVAFMF APIVVVWLLS IGVIGLYNII HWNHRIFLAL SPHYVIKFFK MTGKDGWLSL 300
  301 GGVLLAITGT EAMFADLGHF TAASIRLAFV GAIYPCLVLQ YMGQAAFLSR NMSAVEDSFY 360
  361 QSVPRSLFWP VFVIATLAAV VGSQSIISAT FSIVKQCLSL GCFPRVKVVH TSRWIHGQIY 420
  421 IPEINWILMV LCLAVTLGFR DTTVIGNAYG LACIVVMFVT TWLMALVIIF VWQKNILLAL 480
  481 LFVVAFGSIE VVYLSAAVTK VPQGGWAPIV FAFVFMLVMY VWHYGSRRKY LFDLQNKVSM 540
  541 KWILTLGPSL GIVRVPGIGL IYTELVTGVP SIFSHFVTNL PAFHQVLVFV CVKSVPVPFV 600
  601 PEDERYLIGR IGPREYRMYR CIVRYGYKDV QKDDENFENH LVMSIAKFIQ MEAEEAASSG 660
  661 SYESSEGRMA VIHTEDTTGT GLVMRDSNNE ASGTSLTRSS RSETLRSLQS IYEQESGSLS 720
  721 RRRRVRFEIA EEERIDPQVR DELADLLDAK EAGVTYIIGH SYVKARKNSN FLKTFAIDYA 780
  781 YSFLRKNCRG PAVALHIPHI SLVEVGMIYY V