YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20805883
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFITPTMMGL PIVVTIIMFP SILFPSSERL ISNRLHSFQH WLIKLIIKQM MLIHTPKGRT  60
   61 WALMIVSLIM FIGSTNLLGL LPHTFTPTTQ PSMNLSMAIP LWAGAVILGF RHKLKNSLAH 120
  121 FLPQGTPISL IPMLIIIETI SLFIQPMALA VRLTANITAG HLLMHLIGGA TLVLMDISPP 180
  181 TATITFIILL LLTVLEFAVA LIQAYVFTLL VSLYLHDNT

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.87
Transmembrane Helix	7	26	0.91
Cytoplasmic	27	59	0.91
Transmembrane Helix	60	81	0.93
Non-Cytoplasmic	82	91	0.78
Transmembrane Helix	92	110	0.92
Cytoplasmic	111	124	0.75
Transmembrane Helix	125	149	0.79
Non-Cytoplasmic	150	156	0.69
Transmembrane Helix	157	175	0.91
Cytoplasmic	176	183	0.73
Transmembrane Helix	184	207	0.89
Non-Cytoplasmic	208	219	0.84