YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|495227
Protein type:	Globular with Signal Peptide
Type Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVATAASSAF FPLPSPDTSS RPGKLGNGSS SLSPLKPKFV ANAGLKVKAS ASAPPKINGS  60
   61 SVGLKSGSLK TQEDTPSVPP PRTFINQLPD WSMLLAAITT VFLAAEKQWM MLDWKPKRPD 120
  121 MLVDPFGLGS IVQGGLVFRQ NFSIRSYEIG ADRTASIETV MNHLQETALN HVKSAGLLND 180
  181 GFGRTPEMFK RDLIWVVAKM QVMVNRYPTW GDTVEVNTWV AKSGKNGMRR DWLISDCNTG 240
  241 EILTRASSVW VMMNQKTRKL SKIPDEVRHE IEPHFIDCAP VIEDDDRKLR KLDEKTADSI 300
  301 RKGLTPKWND LDVNQHVNNV KYIGWILEST PQEVLETQEL SSLTLEYRRE CGRESVLESL 360
  361 TAVDSSGKGF GSQFQHLLRL EDGGEIVKGR TEWRPKTAGV NGAIASGETS HGDS

Type	Start	End	Confidence
Signal Peptide	1	20	0.62
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	414	0.95