YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NIP2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSSSSYR FQSGSYPLSS SPSLGNFVER IKDACHFLVS AVLGTIISAI LTFFFALVGT  60
   61 LLGALTGALI GQETESGFIR GAAIGAISGA VFSIEVFESS LDLWKSDESG FGCFLYLIDV 120
  121 IVSLLSGRLV RERIGPAMLS AVQSQMGAVD TAFDDHTSLF DTGGSKGLTG DLVEKIPKMT 180
  181 ITGNNNTDAS ENTDSCSVCL QDFQLGETVR SLPHCHHMFH LPCIDNWLLR HGSCPMCRRD 240
  241 I

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.48
Transmembrane Helix	37	69	0.73
Cytoplasmic	70	76	0.46
Transmembrane Helix	77	97	0.80
Non-Cytoplasmic	98	109	0.57
Transmembrane Helix	110	130	0.73
Cytoplasmic	131	241	0.74