YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2598575
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.91
Transmembrane Helix	19	40	0.85
Non-Cytoplasmic	41	49	0.80
Transmembrane Helix	50	68	0.96
Cytoplasmic	69	75	0.87
Transmembrane Helix	76	94	0.92
Non-Cytoplasmic	95	108	0.71
Transmembrane Helix	109	129	0.89
Cytoplasmic	130	142	0.80
Transmembrane Helix	143	161	0.93
Non-Cytoplasmic	162	189	0.91
Transmembrane Helix	190	210	0.94
Cytoplasmic	211	222	0.82
Transmembrane Helix	223	243	0.95
Non-Cytoplasmic	244	258	0.84
Transmembrane Helix	259	278	0.92
Cytoplasmic	279	286	0.83
Transmembrane Helix	287	307	0.95
Non-Cytoplasmic	308	312	0.76
Transmembrane Helix	313	332	0.95
Cytoplasmic	333	394	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAEKPRSCA TYFENSKPYF AMILLQFGYA GMNIITKLSL NGGMSHYVLV VYRHAFATIA  60
   61 IAPFAIIFEW KDQPKITFSV FMQILLLALL GPVIDQNFYY AGLKLTSPTF SCAMSNMLPA 120
  121 MTFVMAVLCR MEIVNLKKLR CQAKVIGTIL TVAGAMLMTL YKGPVLELMW TKYIPHSNAN 180
  181 ITSSSSKDNW FLGSILLIIA TLAWSSLFVL QAKAIETYKN HQLTLTSLIC FFGTILAFAT 240
  241 TLIMENKDSV WTIGWDMNLL AAAYAGIVTS SISYYIQGLV IKKKGPVFAT SFSPLMMIIV 300
  301 AIMGFFILAE QLFLGSVIGS ILVVIGLYSV LWGKHKEQVE CKVSPDDIPL PIKSARINGN 360
  361 MGAFSASFDK HSEVKLDQKE ESNISLVIIN YNRS