YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPAT2_BRANA
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMAAAVIVP LGILFFISGL VVNLLQAVCY VLVRPMSKNT YRKINRVVAE TLWLELVWIV  60
   61 DWWAGVKIQV FADDETFNRM GKEHALVVCN HRSDIDWLVG WILAQRSGCL GSALAVMKKS 120
  121 SKFLPVIGWS MWFSEYLFLE RNWAKDESTL QSGLQRLNDF PRPFWLALFV EGTRFTEAKL 180
  181 KAAQEYAASS ELPVPRNVLI PRTKGFVSAV SNMRSFVPAI YDMTVAIPKT SPPPTMLRLF 240
  241 KGQPSVVHVH IKCHSMKDLP EPEDEIAQWC RDQFVAKDAL LDKHIAADTF PGQKEQNIGR 300
  301 PIKSLAVVVS WACLLTLGAM KFLHWSNLFS SWKGIALSAF GLGIITLCMQ ILIRSSQSER 360
  361 STPAKVAPAK PKDNHQSGPS SQTEVEEKQK

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.80
Transmembrane Helix	8	33	0.81
Cytoplasmic	34	303	0.83
Transmembrane Helix	304	325	0.89
Non-Cytoplasmic	326	331	0.79
Transmembrane Helix	332	353	0.91
Cytoplasmic	354	390	0.89