YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIP11_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKEEDVRL GANRYSERQP IGTAAQGAGD DKDYKEPPPA PLFEPGELKS WSFYRAGIAE  60
   61 FVATFLFLYI TILTVMGVSK SSSKCATVGI QGIAWSFGGM IFALVYCTAG ISGGHINPAV 120
  121 TFGLFLARKL SLTRAIFYIV MQCLGAICGA GVVKGFQQGL YMGNGGGANV VASGYTKGDG 180
  181 LGAEIVGTFI LVYTVFSATD AKRNARDSHV PILAPLPIGF AVFLVHLATI PITGTGINPA 240
  241 RSLGAAIIYN KDHAWNDHWI FWVGPFVGAA LAAIYHQVII RAIPFKSRS

Type	Start	End	Confidence
Cytoplasmic	1	52	0.95
Transmembrane Helix	53	76	0.83
Non-Cytoplasmic	77	92	0.84
Transmembrane Helix	93	116	0.81
Cytoplasmic	117	134	0.71
Transmembrane Helix	135	156	0.92
Non-Cytoplasmic	157	179	0.89
Transmembrane Helix	180	199	0.91
Cytoplasmic	200	209	0.88
Transmembrane Helix	210	230	0.89
Non-Cytoplasmic	231	257	0.89
Transmembrane Helix	258	279	0.92
Cytoplasmic	280	289	0.90