YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13560098
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTVPMAPAL FGMLILVTVC EAFVAPRPPL AGLAPSSFTS GVGITPTCAP AGVVTSMVAA  60
   61 PNSISAGTTE TRTEAAAYNP LDGPNAPLRS NNNGEVWRPQ KVRPRRNRKS EAMRSMVREN 120
  121 IVRPANFIYP LFIHDKDFEV EIQSMPGCLR HSLPHMLEEV EEAWKFGVRT FVLFPQVPDH 180
  181 LKTNYGEECY NPEGIVPRAV SMIKEKFPDS IVCTDVALDP YSDQGHDGVV KDGQILNDET 240
  241 IMQLTKQVVC QARAGADVVA PSDMMDGRIG AIRDALDAEG FTNVSIMAYT AKYASAFYGP 300
  301 FRDALDSHPG FGDKKTYQQD PANGREALLE AALDAEEGAD MLMVKPGMPY LDVIRRLKES 360
  361 SNLPIAAYHV SGEYAMMKAA VERGWLDERE AVLEAMTCFK RAGADVILTY YAKDAARWLC 420
  421 EDGFP

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	425	0.99