YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APMAP_CHICK
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEAEGLRQR RPLRPQVITE DSPAQEAKEG SAYSSKVFRV TFLTLAASLA VPLLGATVLL  60
   61 DCPIDPQPIS LKEPPLLTGV LEPNNKLQKA ERLWENQLVG PESIVNIGDV LFTGTADGKI 120
  121 LKIEDGEVQT VARIGHGPCG TPEDEPTCGR PLGIRVGPNN TLFVADAYYG LYEVNPGTGE 180
  181 TKMLVSTKTL IEGQKLSFLN DLTVTQDGRK IYFTDSSSKW QRRDFLFLVM EGTDDGRLLE 240
  241 YDTVTKEVKV LMVGLRFPNG VQLSPAEDFV LVLETAMARI RRYYVSGLMK GGADMFVENM 300
  301 PGLPDNIRLS SSGGYWVAMP VVRPNPGFSM LDFLSEKPWI KRMIFKLLSQ ETVTKLLPKR 360
  361 SLVVELSETG SYRRSFHDPT GLTVPYVSEA HEHNGYLYLG SFRSPFICRL NLQHV

Type	Start	End	Confidence
Cytoplasmic	1	39	0.76
Transmembrane Helix	40	60	0.75
Non-Cytoplasmic	61	415	0.99