YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|398599, gi\|480616
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSTIQQSA FVGQTLLKQQ NELVRKVGGN GGRFSMRRTV KSAPQSIWYG PDRPKYLGPF  60
   61 SEQTPSYLTG EFPGDYGWDT AGLSADPETF ARNRELEVIH SRWAMLGALG CVFPEILSKN 120
  121 GVKFGEAVWF KAGSQIFQEG GLDYLGNPNL IHAQSILAIW ACQVVLMGLI EGYRVGGGPL 180
  181 GEGLDKIYPG GAFDPLGLAD DPDAFAELKV KELKNGRLAM FSMFGFFVQA IVTGKGPIEN 240
  241 LSDHLADPVA NNAWAYATNF VPGK

Type	Start	End	Confidence
Cytoplasmic	1	98	0.69
Transmembrane Helix	99	117	0.56
Non-Cytoplasmic	118	149	0.86
Transmembrane Helix	150	170	0.58
Cytoplasmic	171	217	0.66
Transmembrane Helix	218	233	0.46
Non-Cytoplasmic	234	264	0.70