YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16304676
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.63
Transmembrane Helix	7	29	0.57
Non-Cytoplasmic	30	52	0.89
Transmembrane Helix	53	73	0.93
Cytoplasmic	74	85	0.82
Transmembrane Helix	86	106	0.94
Non-Cytoplasmic	107	127	0.90
Transmembrane Helix	128	148	0.88
Cytoplasmic	149	192	0.93
Transmembrane Helix	193	215	0.87
Non-Cytoplasmic	216	223	0.78
Transmembrane Helix	224	245	0.90
Cytoplasmic	246	254	0.87
Transmembrane Helix	255	277	0.93
Non-Cytoplasmic	278	285	0.82
Transmembrane Helix	286	306	0.93
Cytoplasmic	307	325	0.82
Transmembrane Helix	326	343	0.95
Non-Cytoplasmic	344	346	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTSTLLMK TIFLVLIFVS FAISPATSTA PDDCASESAN PCVNKAKALP LKIIAIAAIL  60
   61 VASMIGVGAP LFSRSVPFLQ PDGNIFTIVK CFASGIILGT GFMHVLPDSF DMLSSKCLGE 120
  121 NPWHKFPFSG FLAMLACLVT LVIDSMATTL YTSKNVVGIV PHGHGHGHGP ENDVALPIKE 180
  181 DDSANAQLLR YRVIAMVLEL GIIVHSVVIG LSLGATSDTC TIKGLIAALC FHQMFEGMGL 240
  241 GGCILQAEYT NMKKFVVAFF FAVTTPSGIA LGTALSTVYR ENSPSALITV GLNACSAGLL 300
  301 IYMALVDLLA AEFMGPKLKG SIKMQAKCFL AALLGCGGMS IIAKWA